Literature DB >> 7549540

Contributions of tryptophan side chains to the circular dichroism of globular proteins: exciton couplets and coupled oscillators.

I B Grishina1, R W Woody.   

Abstract

We have applied exciton theory to estimate the circular dichroism (CD) contribution of the Trp Bb transition to the far-UV circular dichroism of globular proteins. Strong exciton couplets are predicted for a number of proteins, including dihydrofolate reductase (DHFR), chymotrypsin and chymotrypsinogen. These predicted CD spectra are dominated by the contributions of the closest pair, W47-W74 in DHFR and W174-W215 in chymotrypsinogen. The sign and magnitude of the predicted couplets are consistent with experimental data for DHFR and its W74L mutant, and with the previously unexplained CD changes upon chymotrypsin activation. More extensive coupled-oscillator interactions among all aromatic and peptide chromophores are described for DHFR and barnase. The total far-UV CD spectra predicted for these proteins agree poorly with experiment, primarily owing to difficulties in the calculation of the peptide CD. Nevertheless, difference spectra calculated between the wild-type spectra and those of mutants in which individual aromatic residues are replaced with non-chromophoric side chains show satisfactory agreement with experiment in most cases.

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Year:  1994        PMID: 7549540     DOI: 10.1039/fd9949900245

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  49 in total

1.  Hierarchical self-assembly of chiral rod-like molecules as a model for peptide beta -sheet tapes, ribbons, fibrils, and fibers.

Authors:  A Aggeli; I A Nyrkova; M Bell; R Harding; L Carrick; T C McLeish; A N Semenov; N Boden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-09       Impact factor: 11.205

2.  Turn stability in beta-hairpin peptides: Investigation of peptides containing 3:5 type I G1 bulge turns.

Authors:  Tamas Blandl; Andrea G Cochran; Nicholas J Skelton
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

3.  Rationally selected basis proteins: a new approach to selecting proteins for spectroscopic secondary structure analysis.

Authors:  Keith A Oberg; Jean-Marie Ruysschaert; Erik Goormaghtigh
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

4.  A thiolate anion buried within the hydrocarbon ruler perturbs PagP lipid acyl chain selection.

Authors:  M Adil Khan; Joel Moktar; Patrick J Mott; Russell E Bishop
Journal:  Biochemistry       Date:  2010-03-23       Impact factor: 3.162

5.  Understanding the key factors that control the rate of beta-hairpin folding.

Authors:  Deguo Du; Yongjin Zhu; Cheng-Yen Huang; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-01       Impact factor: 11.205

6.  A novel folding intermediate state for apolipoprotein A-I: role of the amino and carboxy termini.

Authors:  Eitan Gross; Dao-Quan Peng; Stanley L Hazen; Jonathan D Smith
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

7.  VenusA206 Dimers Behave Coherently at Room Temperature.

Authors:  Youngchan Kim; Henry L Puhl; Eefei Chen; Grace H Taumoefolau; Tuan A Nguyen; David S Kliger; Paul S Blank; Steven S Vogel
Journal:  Biophys J       Date:  2019-04-22       Impact factor: 4.033

Review 8.  How Does Photoreceptor UVR8 Perceive a UV-B Signal?

Authors:  Xiaojing Yang; Sherwin Montano; Zhong Ren
Journal:  Photochem Photobiol       Date:  2015-06-11       Impact factor: 3.421

Review 9.  The UV-B photoreceptor UVR8: from structure to physiology.

Authors:  Gareth I Jenkins
Journal:  Plant Cell       Date:  2014-01-30       Impact factor: 11.277

10.  VCD spectroscopic properties of the beta-hairpin forming miniprotein CLN025 in various solvents.

Authors:  Marcus P D Hatfield; Richard F Murphy; Sándor Lovas
Journal:  Biopolymers       Date:  2010-05       Impact factor: 2.505

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