Literature DB >> 7539156

Anharmonic wave functions of proteins: quantum self-consistent field calculations of BPTI.

A Roitberg1, R B Gerber, R Elber, M A Ratner.   

Abstract

The harmonic approximation for the potential energy of proteins is known to be inadequate for the calculation of many protein properties. To study the effect of anharmonic terms on protein vibrations, the anharmonic wave functions for the ground state and low-lying excited states of the bovine pancreatic trypsin inhibitor (BPTI) were calculated. The results suggest that anharmonic treatments are essential for protein vibrational spectroscopy. The calculation uses the vibrational self-consistent field approximation, which includes anharmonicity and interaction among modes in a mean-field sense. Properties obtained include the quantum coordinate fluctuations, zero-point energies, and the vibrational absorption spectrum.

Entities:  

Mesh:

Substances:

Year:  1995        PMID: 7539156     DOI: 10.1126/science.7539156

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  6 in total

1.  Protein flexibility and conformational state: a comparison of collective vibrational modes of wild-type and D96N bacteriorhodopsin.

Authors:  S E Whitmire; D Wolpert; A G Markelz; J R Hillebrecht; J Galan; R R Birge
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

2.  Conformational change in the activation of lipase: an analysis in terms of low-frequency normal modes.

Authors:  S Jääskeläinen; C S Verma; R E Hubbard; P Linko; L S Caves
Journal:  Protein Sci       Date:  1998-06       Impact factor: 6.725

3.  Raman spectra of long chain hydrocarbons: anharmonic calculations, experiment and implications for imaging of biomembranes.

Authors:  Jiří Šebek; Liat Pele; Eric O Potma; R Benny Gerber
Journal:  Phys Chem Chem Phys       Date:  2011-06-14       Impact factor: 3.676

4.  Solute-induced retardation of water dynamics probed directly by terahertz spectroscopy.

Authors:  U Heugen; G Schwaab; E Bründermann; M Heyden; X Yu; D M Leitner; M Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-08       Impact factor: 11.205

5.  DFT-Calculated IR Spectrum Amide I, II, and III Band Contributions of N-Methylacetamide Fine Components.

Authors:  Yan Ji; Xiaoliang Yang; Zhi Ji; Linhui Zhu; Nana Ma; Dejun Chen; Xianbin Jia; Junming Tang; Yilin Cao
Journal:  ACS Omega       Date:  2020-04-08

6.  Types of potentials in a mitotic spindle.

Authors:  Yelena Nemchen; Randal Hallford; Preet Sharma
Journal:  Biochem Biophys Rep       Date:  2021-07-17
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.