Literature DB >> 7537996

Fuzzy classification of nucleotide sequences and bacterial evolution.

L Luo1, F Ji, H Li.   

Abstract

A new method for reconstructing evolutionary relationship among bacteria by use of rRNA sequence data is proposed. The method is based on the concept of fuzzy classification of probabilities p(i), p(i/j) and p(i/j*) (i = A, G, C, U) of each sequence. The resulting partition tree shares common features of previous works but has some new peculiarities.

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Year:  1995        PMID: 7537996     DOI: 10.1007/bf02460781

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  10 in total

1.  A stochastic evolutionary model of molecular sequences.

Authors:  L Luo; L E Trainor
Journal:  J Theor Biol       Date:  1992-07-07       Impact factor: 2.691

2.  The statistical correlation of nucleotides in protein-coding DNA sequences.

Authors:  L F Luo; H Li
Journal:  Bull Math Biol       Date:  1991       Impact factor: 1.758

Review 3.  Bacterial evolution.

Authors:  C R Woese
Journal:  Microbiol Rev       Date:  1987-06

4.  The concept of cellular evolution.

Authors:  C R Woese; G E Fox
Journal:  J Mol Evol       Date:  1977-09-20       Impact factor: 2.395

5.  Compositional constraints and genome evolution.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

6.  Informational parameters of nucleic acid and molecular evolution.

Authors:  L F Luo; L Tsai; Y M Zhou
Journal:  J Theor Biol       Date:  1988-02-07       Impact factor: 2.691

7.  Earliest phylogenetic branchings: comparing rRNA-based evolutionary trees inferred with various techniques.

Authors:  G J Olsen
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

8.  Prokaryotes and archaebacteria are not monophyletic: rate invariant analysis of rRNA genes indicates that eukaryotes and eocytes form a monophyletic taxon.

Authors:  J A Lake
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

9.  A measure of the similarity of sets of sequences not requiring sequence alignment.

Authors:  B E Blaisdell
Journal:  Proc Natl Acad Sci U S A       Date:  1986-07       Impact factor: 11.205

10.  Eocytes: a new ribosome structure indicates a kingdom with a close relationship to eukaryotes.

Authors:  J A Lake; E Henderson; M Oakes; M W Clark
Journal:  Proc Natl Acad Sci U S A       Date:  1984-06       Impact factor: 11.205

  10 in total

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