Literature DB >> 7529557

DRAWNA: a program for drawing schematic views of nucleic acids.

C Massire1, C Gaspin, E Westhof.   

Abstract

A program for drawing automatically exact and schematic views of nucleic acids is described. The program is written in C ANSI and uses the Silicon Graphics GL and Xirisw libraries within the X11/Motif environment. Through menus, the user can choose, specify, and manipulate in real time the three-dimensional views to be displayed. Drawing options include partitioning of structures into differently colored or shaped fragments, representation of backbones as flat or with conic-section ribbons, display of paired or free bases as rods, and display of surfaces as filled or outlined and stereo or depth-cued views.

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Year:  1994        PMID： 7529557     DOI： 10.1016/0263-7855(94)80088-x

Source DB:  PubMed          Journal:  J Mol Graph        ISSN： 0263-7855


  21 in total

1.  Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding.

Authors:  F Jossinet; J C Paillart; E Westhof; T Hermann; E Skripkin; J S Lodmell; C Ehresmann; B Ehresmann; R Marquet
Journal:  RNA       Date:  1999-09       Impact factor: 4.942

2.  TectoRNA: modular assembly units for the construction of RNA nano-objects.

Authors:  L Jaeger; E Westhof; N B Leontis
Journal:  Nucleic Acids Res       Date:  2001-01-15       Impact factor: 16.971

3.  An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment.

Authors:  F A Kolb; C Malmgren; E Westhof; C Ehresmann; B Ehresmann; E G Wagner; P Romby
Journal:  RNA       Date:  2000-03       Impact factor: 4.942

4.  Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complex.

Authors:  F A Kolb; E Westhof; C Ehresmann; B Ehresmann; E G Wagner; P Romby
Journal:  Nucleic Acids Res       Date:  2001-08-01       Impact factor: 16.971

5.  The three-dimensional architecture of the class I ligase ribozyme.

Authors:  Nicholas H Bergman; Nelson C Lau; Valerie Lehnert; Eric Westhof; David P Bartel
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

6.  Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme.

Authors:  Prashanth Rangan; Benoît Masquida; Eric Westhof; Sarah A Woodson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-06       Impact factor: 11.205

7.  Monitoring intermediate folding states of the td group I intron in vivo.

Authors:  Christina Waldsich; Benoît Masquida; Eric Westhof; Renée Schroeder
Journal:  EMBO J       Date:  2002-10-01       Impact factor: 11.598

8.  3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures.

Authors:  Xiang-Jun Lu; Wilma K Olson
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

9.  Resected RNA pseudoknots and their recognition by histidyl-tRNA synthetase.

Authors:  B Felden; R Giegé
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

10.  Mirror image alternative interaction patterns of the same tRNA with either class I arginyl-tRNA synthetase or class II aspartyl-tRNA synthetase.

Authors:  M Sissler; G Eriani; F Martin; R Giegé; C Florentz
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971
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