Literature DB >> 7525975

11-fold symmetry of the trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis determined by X-ray analysis.

A A Antson1, A M Brzozowski, E J Dodson, Z Dauter, K S Wilson, T Kurecki, J Otridge, P Gollnick.   

Abstract

The trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis has been crystallized and examined by crystallography using X-ray synchrotron radiation diffraction data. Crystals of TRAP complexed with L-tryptophan belong to space group C2 with a = 156.8 A, b = 114.05 A, c = 105.9 A, beta = 118.2 degrees. Crystals of a potential heavy-atom derivative of TRAP complexed with 5-bromo-L-tryptophan grow in the same space group with similar cell dimensions. X-ray data for the native crystals and for the derivative have been collected to 2.9 A and 2.2 A resolution, respectively. Peaks in the self-rotation function and in the Patterson synthesis could only be explained by two 11-subunit oligomers (each formed by an 11-fold axis of symmetry) in the asymmetric unit lying with the 11-fold rotation axes parallel to each other. The consequence is that the TRAP molecule has 11-fold symmetry and contains 11 subunits.

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Year:  1994        PMID: 7525975     DOI: 10.1006/jmbi.1994.1698

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  25 in total

1.  Cellular levels of trp RNA-binding attenuation protein in Bacillus subtilis.

Authors:  Barbara C McCabe; Paul Gollnick
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

2.  Mechanism for pH-dependent gene regulation by amino-terminus-mediated homooligomerization of Bacillus subtilis anti-trp RNA-binding attenuation protein.

Authors:  Joseph R Sachleben; Craig A McElroy; Paul Gollnick; Mark P Foster
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

3.  Intersubunit linker length as a modifier of protein stability: crystal structures and thermostability of mutant TRAP.

Authors:  Masahiro Watanabe; Yumiko Mishima; Ichiro Yamashita; Sam-Yong Park; Jeremy R H Tame; Jonathan G Heddle
Journal:  Protein Sci       Date:  2008-03       Impact factor: 6.725

4.  An Experimental Tool to Estimate the Probability of a Nucleotide Presence in the Crystal Structures of the Nucleotide-Protein Complexes.

Authors:  Maria Nemchinova; Vitaly Balobanov; Ekaterina Nikonova; Natalia Lekontseva; Alisa Mikhaylina; Svetlana Tishchenko; Alexey Nikulin
Journal:  Protein J       Date:  2017-06       Impact factor: 2.371

5.  Identification of a Residue (Glu60) in TRAP Required for Inducing Efficient Transcription Termination at the trp Attenuator Independent of Binding Tryptophan and RNA.

Authors:  Natalie M McAdams; Andrea Patterson; Paul Gollnick
Journal:  J Bacteriol       Date:  2017-02-28       Impact factor: 3.490

6.  The TRAP-like SplA protein is a trans-acting negative regulator of spore photoproduct lyase synthesis during Bacillus subtilis sporulation.

Authors:  P Fajardo-Cavazos; W L Nicholson
Journal:  J Bacteriol       Date:  2000-01       Impact factor: 3.490

7.  TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a toroid-shaped molecule that binds transcripts containing GAG or UAG repeats separated by two nucleotides.

Authors:  P Babitzke; D G Bear; C Yanofsky
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-15       Impact factor: 11.205

8.  1H-NMR characterization of L-tryptophan binding to TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis.

Authors:  V Ramesh; T Brown
Journal:  Biochem J       Date:  1996-05-01       Impact factor: 3.857

9.  Sensing complex regulatory networks by conformationally controlled hairpin ribozymes.

Authors:  S Hani Najafi-Shoushtari; Günter Mayer; Michael Famulok
Journal:  Nucleic Acids Res       Date:  2004-06-15       Impact factor: 16.971

10.  Regulation of the tryptophan biosynthetic genes in Bacillus halodurans: common elements but different strategies than those used by Bacillus subtilis.

Authors:  Reka Szigeti; Mirela Milescu; Paul Gollnick
Journal:  J Bacteriol       Date:  2004-02       Impact factor: 3.490

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