Literature DB >> 7501449

The tandem repeat AGGGTAGGGT is, in the fission yeast, a proximal activation sequence and activates basal transcription mediated by the sequence TGTGACTG.

I Witt1, M Kwart, T Gross, N F Käufer.   

Abstract

Ribosomal protein (rp) genes in the fission yeast Schizosaccharomyces pombe display two highly conserved sequence elements in the promoter region. The molecular dissection of these promoters revealed that basal transcription is not based on a TATA element. The sequence which promotes basal transcription is the conserved sequence CAGTCACA or the inverted form TGTGACTG, called the homol D box. Upstream of the homol D box a tandem repeat AGGGTAGGGT or the inverted form ACCCTACCCT appears in some promoters, called homol E. This element functions in the proximal arrangement with homol D as an activation sequence. A compilation of homol D and homol E sequences identified in other S.pombe promoters revealed that several putative polymerase II and polymerase III promoters display a homol D box or the homol E/homol D arrangement.

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Year:  1995        PMID: 7501449      PMCID: PMC307383          DOI: 10.1093/nar/23.21.4296

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  25 in total

1.  Sequence of the ribosomal protein gene KD4 from Schizosaccharomyces pombe.

Authors:  C Teletski; N F Käufer
Journal:  Nucleic Acids Res       Date:  1989-12-11       Impact factor: 16.971

2.  Schizosaccharomyces pombe U4 small nuclear RNA closely resembles vertebrate U4 and is required for growth.

Authors:  T Dandekar; V Ribes; D Tollervey
Journal:  J Mol Biol       Date:  1989-08-05       Impact factor: 5.469

3.  Primary structure of the ribosomal protein gene S6 from Schizosaccharomyces pombe.

Authors:  T Gross; R Nischt; K Gatermann; U Swida; N F Käufer
Journal:  Curr Genet       Date:  1988       Impact factor: 3.886

4.  The sequence of U3 from Schizosaccharomyces pombe suggests structural divergence of this snRNA between metazoans and unicellular eukaryotes.

Authors:  G L Porter; P J Brennwald; K A Holm; J A Wise
Journal:  Nucleic Acids Res       Date:  1988-11-11       Impact factor: 16.971

Review 5.  New concepts in protein-DNA recognition: sequence-directed DNA bending and flexibility.

Authors:  R E Harrington; I Winicov
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1994

6.  Sequence and regulatory responses of a ribosomal protein gene from the fission yeast Schizosaccharomyces pombe.

Authors:  R Nischt; T Gross; K Gatermann; U Swida; N Käufer
Journal:  Nucleic Acids Res       Date:  1987-02-25       Impact factor: 16.971

7.  Genetic engineering of Schizosaccharomyces pombe: a system for gene disruption and replacement using the ura4 gene as a selectable marker.

Authors:  C Grimm; J Kohli; J Murray; K Maundrell
Journal:  Mol Gen Genet       Date:  1988-12

8.  Functional substitution of mouse ribosomal protein L27' for yeast ribosomal protein L29 in yeast ribosomes.

Authors:  G Fleming; P Belhumeur; D Skup; H M Fried
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

9.  Cycloheximide resistance in yeast: the gene and its protein.

Authors:  N F Käufer; H M Fried; W F Schwindinger; M Jasin; J R Warner
Journal:  Nucleic Acids Res       Date:  1983-05-25       Impact factor: 16.971

10.  Transcription of the triose-phosphate-isomerase gene of Schizosaccharomyces pombe initiates from a start point different from that in Saccharomyces cerevisiae.

Authors:  P R Russell
Journal:  Gene       Date:  1985       Impact factor: 3.688

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  11 in total

1.  Identification of short promoter regions involved in the transcriptional expression of the nitrate reductase gene in Chlamydomonas reinhardtii.

Authors:  R Loppes; M Radoux
Journal:  Plant Mol Biol       Date:  2001-01       Impact factor: 4.076

2.  Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast.

Authors:  Amos Tanay; Aviv Regev; Ron Shamir
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-09       Impact factor: 11.205

3.  Rrn7 protein, an RNA polymerase I transcription factor, is required for RNA polymerase II-dependent transcription directed by core promoters with a HomolD box sequence.

Authors:  Diego A Rojas; Sandra Moreira-Ramos; Susanne Zock-Emmenthal; Fabiola Urbina; Juan Contreras-Levicoy; Norbert F Käufer; Edio Maldonado
Journal:  J Biol Chem       Date:  2011-06-14       Impact factor: 5.157

4.  Features of a unique intronless cluster of class I small heat shock protein genes in tandem with box C/D snoRNA genes on chromosome 6 in tomato (Solanum lycopersicum).

Authors:  Ravinder K Goyal; Vinod Kumar; Vijaya Shukla; Rohini Mattoo; Yongsheng Liu; Sang Ho Chung; James J Giovannoni; Autar K Mattoo
Journal:  Planta       Date:  2011-09-25       Impact factor: 4.116

5.  Cytoplasmic ribosomal protein genes of the fission yeast Schizosaccharomyces pombe display a unique promoter type: a suggestion for nomenclature of cytoplasmic ribosomal proteins in databases.

Authors:  T Gross; N F Käufer
Journal:  Nucleic Acids Res       Date:  1998-07-15       Impact factor: 16.971

6.  U3 snoRNA promoter reflects the RNA's function in ribosome biogenesis.

Authors:  Sadeq Nabavi; Ross N Nazar
Journal:  Curr Genet       Date:  2008-08-21       Impact factor: 3.886

7.  A long noncoding (lnc)RNA governs expression of the phosphate transporter Pho84 in fission yeast and has cascading effects on the flanking prt lncRNA and pho1 genes.

Authors:  Angad Garg; Ana M Sanchez; Stewart Shuman; Beate Schwer
Journal:  J Biol Chem       Date:  2018-02-02       Impact factor: 5.157

8.  Transcription of lncRNA prt, clustered prt RNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression of pho1 gene expression under phosphate-replete conditions in fission yeast.

Authors:  Debashree Chatterjee; Ana M Sanchez; Yehuda Goldgur; Stewart Shuman; Beate Schwer
Journal:  RNA       Date:  2016-05-10       Impact factor: 4.942

9.  Poly(A) site choice and Pol2 CTD Serine-5 status govern lncRNA control of phosphate-responsive tgp1 gene expression in fission yeast.

Authors:  Ana M Sanchez; Stewart Shuman; Beate Schwer
Journal:  RNA       Date:  2017-11-09       Impact factor: 4.942

10.  Determinants of RNA metabolism in the Schizosaccharomyces pombe genome.

Authors:  Philipp Eser; Leonhard Wachutka; Kerstin C Maier; Carina Demel; Mariana Boroni; Srignanakshi Iyer; Patrick Cramer; Julien Gagneur
Journal:  Mol Syst Biol       Date:  2016-02-16       Impact factor: 11.429

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