Literature DB >> 7488861

The pathway to maturity: processing of ribosomal RNA in Saccharomyces cerevisiae.

H A Raué1, R J Planta.   

Abstract

The 17-18S, 5.8S, and 25-28S rRNA species of eukaryotic cells are transcribed by RNA polymerase I into a single precursor molecule, from which external and internal spacer sequences are subsequently removed in an order series of nucleolytic reactions. Whereas the order of the cleavage reactions has long been established, only recently has significant progress been made in detailing the cis-acting elements and the trans-acting factors involved in this process. The use of recently developed systems for in vivo mutational analysis of yeast rDNA has greatly enhanced our knowledge of cis-acting structural features within the pre-rRNA, which are critical for correct and efficient removal of the spacer sequences. The same systems also allow a link to be forged between trans-acting processing factors and these cis-acting elements. In this review the newly obtained information will be summarized, focused predominantly on pre-rRNA processing in the yeast Saccharomyces cerevisiae.

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Year:  1995        PMID: 7488861      PMCID: PMC6138032     

Source DB:  PubMed          Journal:  Gene Expr        ISSN: 1052-2166


  52 in total

1.  A temperature sensitive mutant of Saccharomyces cerevisiae defective in pre-rRNA processing.

Authors:  K Shuai; J R Warner
Journal:  Nucleic Acids Res       Date:  1991-09-25       Impact factor: 16.971

2.  Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae.

Authors:  H D Li; J Zagorski; M J Fournier
Journal:  Mol Cell Biol       Date:  1990-03       Impact factor: 4.272

3.  Alternate pathways for processing in the internal transcribed spacer 1 in pre-rRNA of Saccharomyces cerevisiae.

Authors:  L Lindahl; R H Archer; J M Zengel
Journal:  Nucleic Acids Res       Date:  1994-12-11       Impact factor: 16.971

4.  Sequence and structural elements critical for U8 snRNP function in Xenopus oocytes are evolutionarily conserved.

Authors:  B A Peculis; J A Steitz
Journal:  Genes Dev       Date:  1994-09-15       Impact factor: 11.361

5.  Structural analysis of the internal transcribed spacer 2 of the precursor ribosomal RNA from Saccharomyces cerevisiae.

Authors:  L C Yeh; J C Lee
Journal:  J Mol Biol       Date:  1990-02-20       Impact factor: 5.469

6.  Suppression of yeast RNA polymerase III mutations by FHL1, a gene coding for a fork head protein involved in rRNA processing.

Authors:  S Hermann-Le Denmat; M Werner; A Sentenac; P Thuriaux
Journal:  Mol Cell Biol       Date:  1994-05       Impact factor: 4.272

7.  Different forms of U15 snoRNA are encoded in the introns of the ribosomal protein S1 gene of Xenopus laevis.

Authors:  L Pellizzoni; C Crosio; N Campioni; F Loreni; P Pierandrei-Amaldi
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

8.  Development and application of an in vivo system to study yeast ribosomal RNA biogenesis and function.

Authors:  J Venema; A Dirks-Mulder; A W Faber; H A Raué
Journal:  Yeast       Date:  1995-02       Impact factor: 3.239

9.  Depletion of U3 small nucleolar RNA inhibits cleavage in the 5' external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA.

Authors:  J M Hughes; M Ares
Journal:  EMBO J       Date:  1991-12       Impact factor: 11.598

10.  3'-End formation of transcripts from the yeast rRNA operon.

Authors:  A E Kempers-Veenstra; J Oliemans; H Offenberg; A F Dekker; P W Piper; R J Planta; J Klootwijk
Journal:  EMBO J       Date:  1986-10       Impact factor: 11.598

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  11 in total

1.  Structural equivalence in the transcribed spacers of pre-rRNA transcripts in Schizosaccharomyces pombe.

Authors:  A I Lalev; R N Nazar
Journal:  Nucleic Acids Res       Date:  1999-08-01       Impact factor: 16.971

2.  Synthesis of functional eukaryotic ribosomal RNAs in trans: development of a novel in vivo rDNA system for dissecting ribosome biogenesis.

Authors:  W Q Liang; M J Fournier
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-01       Impact factor: 11.205

3.  Nip7p interacts with Nop8p, an essential nucleolar protein required for 60S ribosome biogenesis, and the exosome subunit Rrp43p.

Authors:  N I Zanchin; D S Goldfarb
Journal:  Mol Cell Biol       Date:  1999-02       Impact factor: 4.272

4.  I-PpoI, the endonuclease encoded by the group I intron PpLSU3, is expressed from an RNA polymerase I transcript.

Authors:  J Lin; V M Vogt
Journal:  Mol Cell Biol       Date:  1998-10       Impact factor: 4.272

5.  Yeast Rrp9p is an evolutionarily conserved U3 snoRNP protein essential for early pre-rRNA processing cleavages and requires box C for its association.

Authors:  J Venema; H R Vos; A W Faber; W J van Venrooij; H A Raué
Journal:  RNA       Date:  2000-11       Impact factor: 4.942

6.  Molecular characterization at the RNA and gene levels of U3 snoRNA from a unicellular green alga, Chlamydomonas reinhardtii.

Authors:  M Antal; A Mougin; M Kis; E Boros; G Steger; G Jakab; F Solymosy; C Branlant
Journal:  Nucleic Acids Res       Date:  2000-08-01       Impact factor: 16.971

7.  All three functional domains of the large ribosomal subunit protein L25 are required for both early and late pre-rRNA processing steps in Saccharomyces cerevisiae.

Authors:  C A van Beekvelt; M de Graaff-Vincent; A W Faber; J van't Riet; J Venema; H A Raué
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

8.  U3 snoRNA genes with and without intron in the Kluyveromyces genus: yeasts can accommodate great variations of the U3 snoRNA 3'-terminal domain.

Authors:  R Fournier; F Brulé; V Ségault; A Mougin; C Branlant
Journal:  RNA       Date:  1998-03       Impact factor: 4.942

9.  Identification of cis-acting elements involved in 3'-end formation of Saccharomyces cerevisiae 18S rRNA.

Authors:  C A van Beekvelt; R E Jeeninga; J van't Riet; J Venema; H A Raué
Journal:  RNA       Date:  2001-06       Impact factor: 4.942

10.  Pentamidine inhibition of group I intron splicing in Candida albicans correlates with growth inhibition.

Authors:  K E Miletti; M J Leibowitz
Journal:  Antimicrob Agents Chemother       Date:  2000-04       Impact factor: 5.191

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