Literature DB >> 7488350

Use of globic scattering factors for protein structures at low resolution.

D Y Guo1, G D Smith, J F Griffin, D A Langs.   

Abstract

At 3 to 4 A resolution, the electron density of a protein may be modeled by a continuous chain of 'globs' representing the amide region of the peptide backbone and the side-chain residues. Group scattering factors are derived from a trans planar C alpha C = ONC alpha backbone segment and most favored side-chain conformer for 18 different amino acids. Trial calculations indicate that the phase error and crystallographic residual comparing the atomic and 'globic' models rapidly decrease from high to low resolution. At 3 A resolution, the phase error is approximately 80 degrees. These results indicate that the electron density of a protein composed of N amino acid residues may be adequately modeled by 2N globs at low resolution.

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Year:  1995        PMID: 7488350     DOI: 10.1107/s0108767395010038

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  5 in total

1.  Determination of domain structure of proteins from X-ray solution scattering.

Authors:  D I Svergun; M V Petoukhov; M H Koch
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

2.  A rapid coarse residue-based computational method for x-ray solution scattering characterization of protein folds and multiple conformational states of large protein complexes.

Authors:  Sichun Yang; Sanghyun Park; Lee Makowski; Benoît Roux
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

3.  Direct phase determination in protein electron crystallography: the pseudo-atom approximation.

Authors:  D L Dorset
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-04       Impact factor: 11.205

4.  RNA structure determination using SAXS data.

Authors:  Sichun Yang; Marc Parisien; François Major; Benoît Roux
Journal:  J Phys Chem B       Date:  2010-08-12       Impact factor: 2.991

Review 5.  Combining NMR and small angle X-ray scattering for the study of biomolecular structure and dynamics.

Authors:  Haydyn D T Mertens; Dmitri I Svergun
Journal:  Arch Biochem Biophys       Date:  2017-05-10       Impact factor: 4.013

  5 in total

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