Literature DB >> 7482789

Human and rodent DNA sequence comparisons: a mosaic model of genomic evolution.

B F Koop1.   

Abstract

Three patterns of DNA sequence conservation have been identified from five human and rodent genomic sequence comparisons. First, a divergent pattern was observed in the noncoding sequences of the beta-globin and gamma-crystallin gene clusters, and second, a highly conserved pattern was observed in the noncoding regions of the T cell receptor C alpha-C delta, and the alpha- and beta-myosin-heavy-chain genes. A third, mixed pattern has also been found in the immunoglobulin IgH C mu-C delta gene region. These three patterns of genomic evolution pose the fascinating possibility that large portions of the genome evolve at different rates.

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Year:  1995        PMID: 7482789     DOI: 10.1016/s0168-9525(00)89108-8

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  23 in total

1.  PipMaker--a web server for aligning two genomic DNA sequences.

Authors:  S Schwartz; Z Zhang; K A Frazer; A Smit; C Riemer; J Bouck; R Gibbs; R Hardison; W Miller
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

2.  A phylogenetic analysis reveals an unusual sequence conservation within introns involved in RNA editing.

Authors:  P J Aruscavage; B L Bass
Journal:  RNA       Date:  2000-02       Impact factor: 4.942

3.  Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences.

Authors:  Martin C Frith; John L Spouge; Ulla Hansen; Zhiping Weng
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

Review 4.  Computational approaches to identify promoters and cis-regulatory elements in plant genomes.

Authors:  Stephane Rombauts; Kobe Florquin; Magali Lescot; Kathleen Marchal; Pierre Rouzé; Yves van de Peer
Journal:  Plant Physiol       Date:  2003-07       Impact factor: 8.340

5.  Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes.

Authors:  Anil G Jegga; Shawn P Sherwood; James W Carman; Andrew T Pinski; Jerry L Phillips; John P Pestian; Bruce J Aronow
Journal:  Genome Res       Date:  2002-09       Impact factor: 9.043

6.  Validation of mRNA/EST-based gene predictions in human Xp11.4 revealed differences to the organization of the orthologous mouse locus.

Authors:  Gaiping Wen; Juliane Ramser; Stefan Taudien; Ulrike Gausmann; Karin Blechschmidt; Adam Frankish; Jennifer Ashurst; Alfons Meindl; Matthias Platzer
Journal:  Mamm Genome       Date:  2005-12-08       Impact factor: 2.957

7.  Sequence conservation at human and mouse orthologous common fragile regions, FRA3B/FHIT and Fra14A2/Fhit.

Authors:  T Shiraishi; T Druck; K Mimori; J Flomenberg; L Berk; H Alder; W Miller; K Huebner; C M Croce
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-24       Impact factor: 11.205

8.  Pufferfish and new paradigm for comparative genome analysis.

Authors:  B F Koop; J H Nadeau
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-20       Impact factor: 11.205

9.  Targeted analysis of orthologous phytochrome A regions of the sorghum, maize, and rice genomes using comparative gene-island sequencing.

Authors:  Daryl T Morishige; Kevin L Childs; L David Moore; John E Mullet
Journal:  Plant Physiol       Date:  2002-12       Impact factor: 8.340

10.  Association between divergence and interspersed repeats in mammalian noncoding genomic DNA.

Authors:  F Chiaromonte; S Yang; L Elnitski; V B Yap; W Miller; R C Hardison
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

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