Literature DB >> 7474083

Double-stranded RNA bacteriophage phi 6 protein P4 is an unspecific nucleoside triphosphatase activated by calcium ions.

A O Paatero1, J E Syväoja, D H Bamford.   

Abstract

Double-stranded RNA bacteriophage phi 6 has an envelope surrounding the nucleocapsid (NC). The NC is composed of a surface protein, P8, and proteins P1, P2, P4, and P7, which form a dodecahedral polymerase complex enclosing the segmented viral genome. Empty polymerase complex particles (procapsids) package positive-sense viral single-stranded RNAs provided that energy is available in the form of nucleoside triphosphates (NTPs). Photoaffinity labelling of both the NC and the procapsid has earlier been used to show that ATP binds to protein P4 and that the NC hydrolyzes NTPs. Using the NC and the NC core particles (NCs lacking surface protein P8) and purified protein P4, we demonstrate here that multimeric P4 is the active NTPase. Isolation of multimeric P4 is successful only in the presence of NTPs. The activity of P4 is the same in association with the viral particles as it is in pure form. P4 is an unspecific NTPase hydrolyzing ribo-NTPs, deoxy NTPs, and dideoxy NTPs to the corresponding nucleoside diphosphates. The Km of the reaction for ATP, GTP, and UTP is around 0.2 to 0.3 mM. The NTP hydrolysis by P4 absolutely requires residual amounts of Mg2+ ions and is greatly activated when the Ca2+ concentration reaches 0.5 mM. Competition experiments indicate that Mg2+ and Ca2+ ions have approximately equal binding affinities for P4. They might compete for a common binding site. The nucleotide specificity and enzymatic properties of the P4 NTPase are similar to the NTP hydrolysis reaction conditions needed to translocate and condense the viral positive-sense RNAs to the procapsid particle.

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Year:  1995        PMID: 7474083      PMCID: PMC189583     

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  31 in total

1.  Purified phi 6 nucleocapsids are capable of productive infection of host cells with partially disrupted outer membranes.

Authors:  P M Ojala; M Romantschuk; D H Bamford
Journal:  Virology       Date:  1990-10       Impact factor: 3.616

2.  Generation of infectious nucleocapsids by in vitro assembly of the shell protein on to the polymerase complex of the dsRNA bacteriophage phi 6.

Authors:  V M Olkkonen; P M Ojala; D H Bamford
Journal:  J Mol Biol       Date:  1991-04-05       Impact factor: 5.469

3.  Chemical crosslinking of bacteriophage phi 6 nucleocapsid proteins.

Authors:  J Hantula; D H Bamford
Journal:  Virology       Date:  1988-08       Impact factor: 3.616

4.  Tentative identification of RNA-dependent RNA polymerases of dsRNA viruses and their relationship to positive strand RNA viral polymerases.

Authors:  E V Koonin; A E Gorbalenya; K M Chumakov
Journal:  FEBS Lett       Date:  1989-07-31       Impact factor: 4.124

5.  RNA binding, packaging and polymerase activities of the different incomplete polymerase complex particles of dsRNA bacteriophage phi 6.

Authors:  J T Juuti; D H Bamford
Journal:  J Mol Biol       Date:  1995-06-09       Impact factor: 5.469

6.  Generation of cDNA clones of the bacteriophage phi 6 segmented dsRNA genome: characterization and expression of L segment clones.

Authors:  H R Revel; M E Ewen; J Brusslan; N Pagratis
Journal:  Virology       Date:  1986-12       Impact factor: 3.616

7.  In vitro packaging of the bacteriophage phi 6 ssRNA genomic precursors.

Authors:  P Gottlieb; J Strassman; A Frucht; X Y Qiao; L Mindich
Journal:  Virology       Date:  1991-04       Impact factor: 3.616

Review 8.  Switching in the self-assembly of tobacco mosaic virus.

Authors:  D L Caspar; K Namba
Journal:  Adv Biophys       Date:  1990

9.  Protein P4 of the bacteriophage phi 6 procapsid has a nucleoside triphosphate-binding site with associated nucleoside triphosphate phosphohydrolase activity.

Authors:  P Gottlieb; J Strassman; L Mindich
Journal:  J Virol       Date:  1992-10       Impact factor: 5.103

10.  Identification of the packaging regions within the genomic RNA segments of bacteriophage phi 6.

Authors:  P Gottlieb; X Qiao; J Strassman; M Frilander; L Mindich
Journal:  Virology       Date:  1994-04       Impact factor: 3.616

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  16 in total

1.  The tailless icosahedral membrane virus PRD1 localizes the proteins involved in genome packaging and injection at a unique vertex.

Authors:  Brent Gowen; Jaana K H Bamford; Dennis H Bamford; Stephen D Fuller
Journal:  J Virol       Date:  2003-07       Impact factor: 5.103

2.  Packaging motor from double-stranded RNA bacteriophage phi12 acts as an obligatory passive conduit during transcription.

Authors:  Denis E Kainov; Jirí Lísal; Dennis H Bamford; Roman Tuma
Journal:  Nucleic Acids Res       Date:  2004-07-06       Impact factor: 16.971

3.  Stepwise expansion of the bacteriophage ϕ6 procapsid: possible packaging intermediates.

Authors:  Daniel Nemecek; Naiqian Cheng; Jian Qiao; Leonard Mindich; Alasdair C Steven; J Bernard Heymann
Journal:  J Mol Biol       Date:  2011-10-12       Impact factor: 5.469

4.  Core protein mu2 is a second determinant of nucleoside triphosphatase activities by reovirus cores.

Authors:  S Noble; M L Nibert
Journal:  J Virol       Date:  1997-10       Impact factor: 5.103

5.  Stoichiometric packaging of the three genomic segments of double-stranded RNA bacteriophage phi6.

Authors:  X Qiao; J Qiao; L Mindich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-15       Impact factor: 11.205

6.  Probing, by self-assembly, the number of potential binding sites for minor protein subunits in the procapsid of double-stranded RNA bacteriophage Φ6.

Authors:  Xiaoyu Sun; Dennis H Bamford; Minna M Poranen
Journal:  J Virol       Date:  2012-08-29       Impact factor: 5.103

7.  Packaging and replication regulation revealed by chimeric genome segments of double-stranded RNA bacteriophage phi6.

Authors:  M M Poranen; D H Bamford
Journal:  RNA       Date:  1999-03       Impact factor: 4.942

8.  Multimers formed by the rotavirus nonstructural protein NSP2 bind to RNA and have nucleoside triphosphatase activity.

Authors:  Z Taraporewala; D Chen; J T Patton
Journal:  J Virol       Date:  1999-12       Impact factor: 5.103

9.  Nonspecific nucleoside triphosphatase P4 of double-stranded RNA bacteriophage phi6 is required for single-stranded RNA packaging and transcription.

Authors:  Markus J Pirttimaa; Anja O Paatero; Mikko J Frilander; Dennis H Bamford
Journal:  J Virol       Date:  2002-10       Impact factor: 5.103

10.  Mutational analysis of the role of nucleoside triphosphatase P4 in the assembly of the RNA polymerase complex of bacteriophage phi6.

Authors:  A O Paatero; L Mindich; D H Bamford
Journal:  J Virol       Date:  1998-12       Impact factor: 5.103

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