Literature DB >> 7473729

Disulfide mutants of barnase. I: Changes in stability and structure assessed by biophysical methods and X-ray crystallography.

J Clarke1, K Henrick, A R Fersht.   

Abstract

In this series of papers, we examine the effects of introducing disulfide bonds on the properties, structure and thermodynamics of a small globular protein, barnase. Three mutants have been made, in each of which a single crosslink confers different properties. Two of the disulfide bonds, between residues 43 and 80 (43-80) and between residues 85 and 102 (85-102), stabilise the protein, relative to both wild-type and the corresponding (reduced) dithiol forms: 85-102 is more stable than predicted from the entropic destabilisation of the unfolded state; 43-80 is less stable than predicted. The third disulfide bond, between residues 70 and 92 (70-92) destabilises the protein relative to both wild-type and the corresponding dithiol form, implying significant disruption of the folded protein on formation of the disulfide bond. Crystal structures of the three mutant proteins have been solved. All three proteins have essentially the same fold as wild-type, but with left-handed disulfide bonds, which have dihedral geometries that have not been observed in naturally occurring disulfides. In the very stable mutant 85-102, there is no significant difference between the mutant and wild-type structures: these data do not explain the large stability of this protein. The disulfide bond at 43-80 induces small structural rearrangements close to the site of the disulfide bond, associated with some local disorder: the crosslink appears to decrease the stability of the native form of the protein. The destabilising disulfide bond at 70-92 induces considerable structural change, with displacement of a loop and consequent disruption of a stabilising salt-bridge. Our studies do not support the view that the conformation of the disulfide bond is crucial in determining the stability of the mutant proteins.

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Year:  1995        PMID: 7473729     DOI: 10.1006/jmbi.1995.0568

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  18 in total

1.  Novel disulfide engineering in human carbonic anhydrase II using the PAIRWISE side-chain geometry database.

Authors:  R E Burton; J A Hunt; C A Fierke; T G Oas
Journal:  Protein Sci       Date:  2000-04       Impact factor: 6.725

Review 2.  Structural organization of G-protein-coupled receptors.

Authors:  A L Lomize; I D Pogozheva; H I Mosberg
Journal:  J Comput Aided Mol Des       Date:  1999-07       Impact factor: 3.686

3.  The effects of disulfide bonds on the denatured state of barnase.

Authors:  J Clarke; A M Hounslow; C J Bond; A R Fersht; V Daggett
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

4.  Stabilizing the integrin alpha M inserted domain in alternative conformations with a range of engineered disulfide bonds.

Authors:  Motomu Shimaoka; Chafen Lu; Azucena Salas; Tsan Xiao; Junichi Takagi; Timothy A Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-04       Impact factor: 11.205

5.  Trapping a 96 degrees domain rotation in two distinct conformations by engineered disulfide bridges.

Authors:  Robert Schultz-Heienbrok; Timm Maier; Norbert Sträter
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

6.  DNA transport by a type II topoisomerase: direct evidence for a two-gate mechanism.

Authors:  J Roca; J M Berger; S C Harrison; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-30       Impact factor: 11.205

7.  Meet me halfway: when genomics meets structural bioinformatics.

Authors:  Sungsam Gong; Catherine L Worth; Tammy M K Cheng; Tom L Blundell
Journal:  J Cardiovasc Transl Res       Date:  2011-02-25       Impact factor: 4.132

8.  Additional disulfide bonds in insulin: Prediction, recombinant expression, receptor binding affinity, and stability.

Authors:  Tine N Vinther; Ingrid Pettersson; Kasper Huus; Morten Schlein; Dorte B Steensgaard; Anders Sørensen; Knud J Jensen; Thomas Kjeldsen; František Hubalek
Journal:  Protein Sci       Date:  2015-03-16       Impact factor: 6.725

9.  Structural analysis of three His32 mutants of DsbA: support for an electrostatic role of His32 in DsbA stability.

Authors:  L W Guddat; J C Bardwell; R Glockshuber; M Huber-Wunderlich; T Zander; J L Martin
Journal:  Protein Sci       Date:  1997-09       Impact factor: 6.725

10.  Engineering domain-swapped binding interfaces by mutually exclusive folding.

Authors:  Jeung-Hoi Ha; Joshua M Karchin; Nancy Walker-Kopp; Li-Shar Huang; Edward A Berry; Stewart N Loh
Journal:  J Mol Biol       Date:  2012-01-08       Impact factor: 5.469

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