Literature DB >> 7460919

An analysis of fish genomes by density gradient centrifugation.

A P Hudson, G Cuny, J Cortadas, A E Haschemeyer, G Bernardi.   

Abstract

DNA was prepared from 33 species of fishes representing 12 of the 31 orders of Teleostei and one order of Chondrichthyes. DNA samples were investigated to determine modal and mean buoyant densities in CsCl (Rho-0 and <Rho>), main-band asymmetry, intermolecular compositional heterogeneity and base composition. Modal buoyant densities ranged over 1.697-1.704 g/cm3, generally with identical or close values for DNAs from species belonging to the same order. Main bands were practically symmetrical in most cases; when present, asymmetries were on the heavy side of the band and rather modest. In most cases, compositional heterogeneities were equal to, or lower than, those of bacterial DNAs. Both the CsCl band symmetry and the low compositional heterogeneity strikingly distinguish fish DNAs from the DNAs of warm-blooded vertebrates and indicate a major discontinuity in genome organization in the vertebrates. The overall properties of the main bands of fish DNAs are very similar to those exhibited by the light components of DNAs from mammals and birds.

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Year:  1980        PMID: 7460919     DOI: 10.1111/j.1432-1033.1980.tb07195.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  15 in total

1.  Compositional transitions in the nuclear genomes of cold-blooded vertebrates.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1990-10       Impact factor: 2.395

2.  The major compositional transitions in the vertebrate genome.

Authors:  G Bernardi; S Hughes; D Mouchiroud
Journal:  J Mol Evol       Date:  1997       Impact factor: 2.395

3.  A thermal denaturation study of genomic DNAs from North American minnows (Cyprinidae: Teleostei).

Authors:  W J Karel; J R Gold
Journal:  Genetica       Date:  1987-10-30       Impact factor: 1.082

4.  Compositional compartmentalization and gene composition in the genome of vertebrates.

Authors:  D Mouchiroud; G Fichant; G Bernardi
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

5.  The isochore patterns of mammalian genomes and their phylogenetic implications.

Authors:  G Sabeur; G Macaya; F Kadi; G Bernardi
Journal:  J Mol Evol       Date:  1993-08       Impact factor: 2.395

Review 6.  Genome organization and species formation in vertebrates.

Authors:  G Bernardi
Journal:  J Mol Evol       Date:  1993-10       Impact factor: 2.395

7.  Sequence organization and genomic distribution of the major family of interspersed repeats of mouse DNA.

Authors:  M Meunier-Rotival; P Soriano; G Cuny; F Strauss; G Bernardi
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

Review 8.  Structural characteristics of genome organization in amphibians: differential staining of chromosomes and DNA structure.

Authors:  V J Birstein
Journal:  J Mol Evol       Date:  1982       Impact factor: 2.395

9.  Compositional patterns in the nuclear genome of cold-blooded vertebrates.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1990-10       Impact factor: 2.395

10.  The short-sequence designs of isochores from the human genome.

Authors:  Maria Costantini; Giorgio Bernardi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-09       Impact factor: 11.205

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