Literature DB >> 7441779

Some evidence for the universality of structural periodicity in proteins.

O C Ivanov, C P Ivanov.   

Abstract

A new simple and sensitive method for detecting small periodicity (repetition of a small segment along the chain) in proteins is developed, based on the repetition of identical residues. 38 proteins from organisms representing different levels of evolutionary development have been tested for small periodicity. The same is done with the nodal ancestors of 25 of them. The results are presented graphically (the periodicity curves). The statistical significance of the observed periodicity is confirmed by a modified version of the chi-square test. All the results obtained support the conception that the small periodicity of the contemporary proteins is a reflection of their evolutionary history and that the most ancient proteins have arisen through a polycondensation of short peptides or through transcription and translation of satellite-type repeat sequence DNA.

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Year:  1980        PMID: 7441779     DOI: 10.1007/bf01732069

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  51 in total

1.  The amino acid sequence of a cytochrome c from a protozoan Crithidia oncopelti.

Authors:  G W. Pettigrew
Journal:  FEBS Lett       Date:  1972-04-15       Impact factor: 4.124

2.  Comparison between human and bird lysozymes: Note concerning the previously observed deletion.

Authors:  J Jollès; P Jollès
Journal:  FEBS Lett       Date:  1972-04-15       Impact factor: 4.124

3.  Non-random relationships among amino acids in protein sequences.

Authors:  J A Black; R N Harkins; P Stenzel
Journal:  Int J Pept Protein Res       Date:  1976

4.  The covalent structure of collagen. 2. The amino-acid sequence of alpha1-CB7 from calf-skin collagen.

Authors:  P P Fietzek; F W Rexrodt; K E Hopper; K Kühn
Journal:  Eur J Biochem       Date:  1973-10-05

5.  Chemical studies on the cyanogen bromide peptides of rat skin collagen. Amino acid sequence of 1-CB4.

Authors:  W T Butler; S L Ponds
Journal:  Biochemistry       Date:  1971-05-25       Impact factor: 3.162

6.  The structural code for proteins: zonal distribution of amino acid residues and stabilization of helices by hydrophobic triplets.

Authors:  J Palau; P Puigdoménech
Journal:  J Mol Biol       Date:  1974-09-15       Impact factor: 5.469

7.  Conservation of Shannon's redundancy for proteins.

Authors:  L L Gatlin
Journal:  J Mol Evol       Date:  1974       Impact factor: 2.395

8.  Repeating sequences and gene duplication in proteins.

Authors:  A D McLachlan
Journal:  J Mol Biol       Date:  1972-03-14       Impact factor: 5.469

9.  The evolution and ancestors of toxic proteins.

Authors:  C P Ivanov; O C Ivanov
Journal:  Toxicon       Date:  1979       Impact factor: 3.033

10.  Structure of rat skin collagen 1-CB8. Amino acid sequence of the hydroxylamine-produced fragment HA1.

Authors:  G Balian; E M Click; P Bornstein
Journal:  Biochemistry       Date:  1971-11-23       Impact factor: 3.162

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  5 in total

1.  Analysis of sequence periodicity in E. coli proteins: empirical investigation of the "duplication and divergence" theory of protein evolution.

Authors:  Derek Gatherer; Neil R McEwan
Journal:  J Mol Evol       Date:  2003-08       Impact factor: 2.395

2.  Phylogenetic differences in content and intensity of periodic proteins.

Authors:  Derek Gatherer; Neil R McEwan
Journal:  J Mol Evol       Date:  2005-04       Impact factor: 2.395

3.  Pattern recognition of sequence similarities in globular proteins by Fourier analysis: a novel approach to molecular evolution.

Authors:  A M Liquori; A Ripamonti; C Sadun; S Ottani; D Braga
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

4.  Universal regularities in protein primary structure: preference in bonding and periodicity.

Authors:  O C Ivanov; B Förtsch
Journal:  Orig Life Evol Biosph       Date:  1986       Impact factor: 1.950

5.  The structural periodicity of E. coli ribosomal proteins.

Authors:  O C Ivanov; P S Kenderov; J P Revalski
Journal:  Orig Life       Date:  1984
  5 in total

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