Literature DB >> 7432511

Highly structured water network in crystals of a deoxydinucleoside---drug complex.

S Neidle, H M Berman, H S Shieh.   

Abstract

X-ray diffraction analysis of crystals of the intercalative complex between the deoxyribonucleoside phosphate d(CpG) and the mutagen proflavine shows a highly structured arrangement of water molecules linked together by newtworks of hydrogen bonds to form four edge-linked pentagons per asymmetric unit. These pentagons have a general role in maximizing hydrogen bonding at 3.4-A intervals. The conformation of the deoxyribose sugar ring at the 3' end of one strand can depend on its local aqueous environment.

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Year:  1980        PMID: 7432511     DOI: 10.1038/288129a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  13 in total

1.  Structural insights into the effect of hydration and ions on A-tract DNA: a molecular dynamics study.

Authors:  A Madhumalar; Manju Bansal
Journal:  Biophys J       Date:  2003-09       Impact factor: 4.033

2.  Hydration of nucleic acid fragments: comparison of theory and experiment for high-resolution crystal structures of RNA, DNA, and DNA-drug complexes.

Authors:  G Hummer; A E García; D M Soumpasis
Journal:  Biophys J       Date:  1995-05       Impact factor: 4.033

3.  Grand canonical ensemble Monte Carlo simulation of the dCpG/proflavine crystal hydrate.

Authors:  H Resat; M Mezei
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

4.  Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster.

Authors:  DengGuo Wei; W David Wilson; Stephen Neidle
Journal:  J Am Chem Soc       Date:  2013-01-16       Impact factor: 15.419

5.  A systematic method for studying the spatial distribution of water molecules around nucleic acid bases.

Authors:  B Schneider; D M Cohen; L Schleifer; A R Srinivasan; W K Olson; H M Berman
Journal:  Biophys J       Date:  1993-12       Impact factor: 4.033

6.  Molecular mechanical studies of proflavine and acridine orange intercalation.

Authors:  A Dearing; P Weiner; P A Kollman
Journal:  Nucleic Acids Res       Date:  1981-03-25       Impact factor: 16.971

7.  Terahertz vibrational properties of water nanoclusters relevant to biology.

Authors:  Keith Johnson
Journal:  J Biol Phys       Date:  2011-09-14       Impact factor: 1.365

8.  Water structure of a hydrophobic protein at atomic resolution: Pentagon rings of water molecules in crystals of crambin.

Authors:  M M Teeter
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

9.  DNA renaturation at the water-phenol interface.

Authors:  A Goldar; J-L Sikorav
Journal:  Eur Phys J E Soft Matter       Date:  2004-07       Impact factor: 1.890

10.  Visualisation of extensive water ribbons and networks in a DNA minor-groove drug complex.

Authors:  A Guerri; I J Simpson; S Neidle
Journal:  Nucleic Acids Res       Date:  1998-06-15       Impact factor: 16.971

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