Literature DB >> 7378544

Simulation methods for protein structure fluctuations.

S H Northrup, J A McCammon.   

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Year:  1980        PMID： 7378544     DOI： 10.1002/bip.1980.360190506

Source DB:  PubMed          Journal:  Biopolymers        ISSN： 0006-3525            Impact factor:   2.505


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  9 in total

Review 1.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

2.  Mass-weighted molecular dynamics simulation and conformational analysis of polypeptide.

Authors:  B Mao
Journal:  Biophys J       Date:  1991-09       Impact factor: 4.033

Review 3.  Molecular modeling of nucleic acid structure: energy and sampling.

Authors:  T E Cheatham; B R Brooks; P A Kollman
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2001-05

4.  Simulated Q-annealing: conformational search with an effective potential.

Authors:  Won-joon Son; Soonmin Jang; Seokmin Shin
Journal:  J Mol Model       Date:  2011-04-27       Impact factor: 1.810

Review 5.  Development of constant-pH simulation methods in implicit solvent and applications in biomolecular systems.

Authors:  Fernando Luís Barroso daSilva; Luis Gustavo Dias
Journal:  Biophys Rev       Date:  2017-09-18

6.  Modeling of protein loops by simulated annealing.

Authors:  V Collura; J Higo; J Garnier
Journal:  Protein Sci       Date:  1993-09       Impact factor: 6.725

7.  Conformational search by potential energy annealing: algorithm and application to cyclosporin A.

Authors:  R C van Schaik; W F van Gunsteren; H J Berendsen
Journal:  J Comput Aided Mol Des       Date:  1992-04       Impact factor: 3.686

Review 8.  Molecular dynamics: survey of methods for simulating the activity of proteins.

Authors:  Stewart A Adcock; J Andrew McCammon
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

Review 9.  Molecular modeling of nucleic acid structure: energy and sampling.

Authors:  Christina Bergonzo; Rodrigo Galindo-Murillo; Thomas E Cheatham
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2013-10-08
  9 in total

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