Literature DB >> 7357072

Monte Carlo computation of the supercoiling energy, the sedimentation constant, and the radius of gyration of unknotted and knotted circular DNA.

M Le Bret.   

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Year:  1980        PMID： 7357072     DOI： 10.1002/bip.1980.360190312

Source DB:  PubMed          Journal:  Biopolymers        ISSN： 0006-3525            Impact factor:   2.505


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  17 in total

1.  Equilibrium distributions of topological states in circular DNA: interplay of supercoiling and knotting.

Authors:  A A Podtelezhnikov; N R Cozzarelli; A V Vologodskii
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

2.  Simulations of action of DNA topoisomerases to investigate boundaries and shapes of spaces of knots.

Authors:  Alessandro Flammini; Amos Maritan; Andrzej Stasiak
Journal:  Biophys J       Date:  2004-08-23       Impact factor: 4.033

3.  Unlinking of supercoiled DNA catenanes by type IIA topoisomerases.

Authors:  Alexander Vologodskii
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

4.  DNA knots reveal a chiral organization of DNA in phage capsids.

Authors:  Javier Arsuaga; Mariel Vazquez; Paul McGuirk; Sonia Trigueros; De Witt Sumners; Joaquim Roca
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-15       Impact factor: 11.205

5.  Monte Carlo simulations of supercoiling free energies for unknotted and trefoil knotted DNAs.

Authors:  J A Gebe; S A Allison; J B Clendenning; J M Schurr
Journal:  Biophys J       Date:  1995-02       Impact factor: 4.033

6.  Configurational transitions in Fourier series-represented DNA supercoils.

Authors:  G Liu; T Schlick; A J Olson; W K Olson
Journal:  Biophys J       Date:  1997-10       Impact factor: 4.033

7.  The effect of intrinsic curvature on conformational properties of circular DNA.

Authors:  V Katritch; A Vologodskii
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

8.  Tightness of knots in a polymer chain.

Authors:  Xiaozhong Zheng; Alexander Vologodskii
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-04-26

9.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06

10.  Temperature dependence of DNA persistence length.

Authors:  Stephanie Geggier; Alexander Kotlyar; Alexander Vologodskii
Journal:  Nucleic Acids Res       Date:  2010-10-15       Impact factor: 16.971
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