Literature DB >> 7253036

Globin evolution was apparently very rapid in early vertebrates: a reasonable case against the rate-constancy hypothesis.

M Goodman.   

Abstract

Kimura mistook ambiguous maximum parsimony codons for wrong codons. The maximum parsimony method performed well as judged by the two classes of serine codons (which can not be connected by silent mutations) on comparing the parsimony codons for serines in human, rabbit, and mouse alpha hemoglobin chains to actual codons determined by nucleotide sequencing. In genealogical reconstructions involving 247 eucaryotic globins, the maximum parsimony distances separating the contemporary sequences show that Kimura's Poisson and Dayhoff's PAM estimates of rate of globin evolution miss most of the superimposed replacements and are therefore seriously in error. Nor is Kimura's constant rate assumption and his belief in a single origin of myoglobin supported. Lamprey myoglobin appears to be most like lamprey hemoglobin, while gnathostome myoglobin seems closest to gnathostome hemoglobin. It was found that the three types of gnathostome globins (Mb, alpha Hb, beta Hb) evolved between the shark-boney vertebrate and bird-mammal ancestors at a much faster rate than from the latter ancestor to the present. The data indicate that rates were exceedingly fast during the origin of these globin chains because a high proportion of substitutions were adaptive. It was concluded that wherever strong stabilizing selection acts on a protein, somewhere in the past positive Darwinian selection must have spread the amino acid substitutions now being preserved.

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Year:  1981        PMID: 7253036     DOI: 10.1007/bf01732683

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  23 in total

1.  Nucleotide sequence of the coding portion of human alpha globin messenger RNA.

Authors:  J T Wilson; L B Wilson; V B Reddy; C Cavallesco; P K Ghosh; J K deRiel; B G Forget; S M Weissman
Journal:  J Biol Chem       Date:  1980-04-10       Impact factor: 5.157

2.  Proof of the populous path algorithm for missing mutations in parsimony trees.

Authors:  G W Moore
Journal:  J Theor Biol       Date:  1977-05-07       Impact factor: 2.691

Review 3.  Evolutionary diversification of structure and function in the family of intracellular calcium-binding proteins.

Authors:  M Goodman; J F Pechère; J Haiech; J G Demaille
Journal:  J Mol Evol       Date:  1979-11       Impact factor: 2.395

4.  A method for constructing maximum parsimony ancestral amino acid sequences on a given network.

Authors:  G W Moore; J Barnabas; M Goodman
Journal:  J Theor Biol       Date:  1973-03       Impact factor: 2.691

5.  The rate of molecular evolution considered from the standpoint of population genetics.

Authors:  M Kimura
Journal:  Proc Natl Acad Sci U S A       Date:  1969-08       Impact factor: 11.205

6.  The complete sequence of a chromosomal mouse alpha--globin gene reveals elements conserved throughout vertebrate evolution.

Authors:  Y Nishioka; P Leder
Journal:  Cell       Date:  1979-11       Impact factor: 41.582

7.  Characterization of the myoglobin of the lamprey Petromyzon marinus.

Authors:  A E Romero-Herrera; N Lieska; S Nasser
Journal:  J Mol Evol       Date:  1979-12       Impact factor: 2.395

8.  The method of parsimony: an experimental test and theoretical analysis of the adequacy of molecular restoration studies.

Authors:  R Holmquist
Journal:  J Mol Biol       Date:  1979-12-25       Impact factor: 5.469

9.  Haemoglobins of the shark, Heterodontus portusjacksoni II. Amino acid sequence of the alpha-chain.

Authors:  A R Nash; W K Fisher; E O Thompson
Journal:  Aust J Biol Sci       Date:  1976-03

10.  Haemoglobins of the shark, Heterodontus portusjacksoni. III. Amino acid sequence of the beta-chain.

Authors:  W K Fisher; A R Nash; E O Thompson
Journal:  Aust J Biol Sci       Date:  1977-12
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  10 in total

Review 1.  Evolutionary consequences of nonrandom damage and repair of chromatin domains.

Authors:  T Boulikas
Journal:  J Mol Evol       Date:  1992-08       Impact factor: 2.395

2.  Gene conversion and functional divergence in the beta-globin gene family.

Authors:  Gabriela Aguileta; Joseph P Bielawski; Ziheng Yang
Journal:  J Mol Evol       Date:  2004-08       Impact factor: 2.395

Review 3.  Revisiting junk DNA.

Authors:  E Zuckerkandl
Journal:  J Mol Evol       Date:  1992-03       Impact factor: 2.395

Review 4.  Sequence analysis of the AAA protein family.

Authors:  A Beyer
Journal:  Protein Sci       Date:  1997-10       Impact factor: 6.725

5.  A theoretical method for evaluating the relative importance of positive selection and neutral drift from observed base changes.

Authors:  J Otsuka; S Fukuchi; N Kikuchi
Journal:  J Mol Evol       Date:  1997-08       Impact factor: 2.395

6.  Divergence pattern and selective mode in protein evolution: the example of vertebrate myoglobins and hemoglobin chains.

Authors:  J Otsuka; K Miyazaki; K Horimoto
Journal:  J Mol Evol       Date:  1993-02       Impact factor: 2.395

7.  Evolution of catalytic proteins or on the origin of enzyme species by means of natural selection.

Authors:  H Kacser; R Beeby
Journal:  J Mol Evol       Date:  1984       Impact factor: 2.395

8.  Discrimination between adaptive and neutral amino acid substitutions in vertebrate hemoglobins.

Authors:  K Horimoto; H Suzuki; J Otsuka
Journal:  J Mol Evol       Date:  1990-10       Impact factor: 2.395

Review 9.  Gene duplication, genome duplication, and the functional diversification of vertebrate globins.

Authors:  Jay F Storz; Juan C Opazo; Federico G Hoffmann
Journal:  Mol Phylogenet Evol       Date:  2012-07-27       Impact factor: 4.286

10.  Gene Duplications Are At Least 50 Times Less Frequent than Gene Transfers in Prokaryotic Genomes.

Authors:  Fernando D K Tria; William F Martin
Journal:  Genome Biol Evol       Date:  2021-10-01       Impact factor: 3.416

  10 in total

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