Literature DB >> 7213626

Insights into heme structure from Soret excitation Raman spectroscopy.

P M Callahan, G T Babcock.   

Abstract

Laser lines in resonance with the Soret band optical transitions of several heme proteins and heme model compounds have been used to obtain Raman spectra of these species. Correlations between the observed frequency of a polarized mode in the 1560-1600-cm-1 region and the heme iron spin and coordination geometry have been developed. The position of this band is also a function of the pattern of porphyrin pyrrole ring beta-carbon substitution, and therefore structural information can be extracted from the Raman data only after this dependence has been taken into account. Quantitative correlations between the frequency of this band and the porphyrin core size are presented for three commonly occurring classes of heme compounds: (a) protoheme derivatives, (b) iron porphyrins in which all ring positions are saturated, and (c) heme alpha species. A polarized mode in the 1470-1510-cm-1 region is also consistently enhanced upon Soret excitation of these compounds, but is relatively insensitive to peripheral substituents, and can be used in conjunction with the polarized mode described above to assign heme geometries. In the frequency region above 1600 cm-1, a vibration is observed which also responds to changes in porphyrin geometry. However, this band is sometimes obscured by vibrations of unsaturated beta-carbon substituents, particularly in the case of protoheme derivatives. The normal coordinate analysis developed by Abe and co-workers [Abe, M., Kitagawa, T., & Kyogoku, Y. (1978) J Chem. Phys. 69, 4526-4534] is used to rationalize the dependence of the various modes on porphyrin geometry and peripheral substitution.

Entities:  

Mesh:

Substances:

Year:  1981        PMID: 7213626     DOI: 10.1021/bi00507a048

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  6 in total

1.  Resonance Raman spectral isolation of the a and a3 chromophores in cytochrome oxidase.

Authors:  P V Argade; Y C Ching; D L Rousseau
Journal:  Biophys J       Date:  1986-10       Impact factor: 4.033

2.  Horse heart ferricytochrome c: conformation and heme configuration of low ionic strength acidic forms.

Authors:  Y P Myer; A F Saturno
Journal:  J Protein Chem       Date:  1990-08

3.  Vibrational spectroscopic analyses of unique yellow feather pigments (spheniscins) in penguins.

Authors:  Daniel B Thomas; Cushla M McGoverin; Kevin J McGraw; Helen F James; Odile Madden
Journal:  J R Soc Interface       Date:  2013-03-20       Impact factor: 4.118

4.  Optical tweezers-controlled hotspot for sensitive and reproducible surface-enhanced Raman spectroscopy characterization of native protein structures.

Authors:  Xin Dai; Wenhao Fu; Huanyu Chi; Vince St Dollente Mesias; Hongni Zhu; Cheuk Wai Leung; Wei Liu; Jinqing Huang
Journal:  Nat Commun       Date:  2021-02-26       Impact factor: 14.919

5.  Haem-assisted dityrosine-cross-linking of fibrinogen under non-thermal plasma exposure: one important mechanism of facilitated blood coagulation.

Authors:  Zhigang Ke; Qing Huang
Journal:  Sci Rep       Date:  2016-05-27       Impact factor: 4.379

6.  Redox control and autoxidation of class 1, 2 and 3 phytoglobins from Arabidopsis thaliana.

Authors:  Augustin C Mot; Cristina Puscas; Patricia Miclea; Galaba Naumova-Letia; Sorin Dorneanu; Dorina Podar; Nico Dissmeyer; Radu Silaghi-Dumitrescu
Journal:  Sci Rep       Date:  2018-09-12       Impact factor: 4.379

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.