Literature DB >> 7208356

Nucleosome dissociation at physiological ionic strengths.

R W Cotton, B A Hamkalo.   

Abstract

Monomer nucleosomes purified on isokinetic sucrose gradients are shown to dissociate into component DNA and histones at physiological ionic strength upon dilution to a DNA concentration below 20 microgram/ml. The starting material is 11S, contains 145-190 BP DNA, and equimolar amounts of the four core histones with slightly less H1. Dilution of monomers in the presence of 0.14 M NaCl results in the rapid conversion of 10-40% of the 3H thymidine labeled material from 11S to 5S (5S is coincident with the S value of monomer length DNA). The proportion of nucleosomes which dissociate increases with increasing NaCl concentration between 0.15 M and 0.35 M and decreases with increasing DNA concentration above 1 microgram/ml. Recycling 11S monomers, which remain after dissociation, through a second dilution in salt generates an equivalent proportion of 5S material as seen after the initial dilution. Thus, the dissociation does not result from special properties of a subset of nucleosomes. An equilibrium between intact monomer and free DNA and histones appears to be rapidly established under the conditions described and the dissociated DNA will reassociate with histones to form 11S monomers if conditions of high DNA concentration and low ionic strength are established.

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Year:  1981        PMID: 7208356      PMCID: PMC326704          DOI: 10.1093/nar/9.2.445

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  Electron microscopic and biochemical evidence that chromatin structure is a repeating unit.

Authors:  P Oudet; M Gross-Bellard; P Chambon
Journal:  Cell       Date:  1975-04       Impact factor: 41.582

Review 2.  Histones.

Authors:  I Isenberg
Journal:  Annu Rev Biochem       Date:  1979       Impact factor: 23.643

Review 3.  Structure of chromatin.

Authors:  R D Kornberg
Journal:  Annu Rev Biochem       Date:  1977       Impact factor: 23.643

4.  DNA folding by histones: the kinetics of chromatin core particle reassembly and the interaction of nucleosomes with histones.

Authors:  A Stein
Journal:  J Mol Biol       Date:  1979-05-15       Impact factor: 5.469

5.  Improved computer program data for the resolution and fractionation of macromolecules by isokinetic sucrose density gradient sedimentation.

Authors:  K S McCarty; R T Vollmer; K S McCarty
Journal:  Anal Biochem       Date:  1974-09       Impact factor: 3.365

6.  Chromatin sub-structure. The digestion of chromatin DNA at regularly spaced sites by a nuclear deoxyribonuclease.

Authors:  D R Hewish; L A Burgoyne
Journal:  Biochem Biophys Res Commun       Date:  1973-05-15       Impact factor: 3.575

7.  Self redigestion of native chromatin.

Authors:  C W Carter; L F Levinger
Journal:  Biochem Biophys Res Commun       Date:  1977-02-07       Impact factor: 3.575

8.  The nature of the interaction of nucleosomes with a eukaryotic RNA polymerase II.

Authors:  D M Lilley; M F Jacobs; M Houghton
Journal:  Nucleic Acids Res       Date:  1979-09-25       Impact factor: 16.971

  8 in total
  15 in total

1.  Molecular recognition of the nucleosomal "supergroove".

Authors:  Rajeswari S Edayathumangalam; Philipp Weyermann; Joel M Gottesfeld; Peter B Dervan; Karolin Luger
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-20       Impact factor: 11.205

2.  Effect of force on mononucleosomal dynamics.

Authors:  Shirley Mihardja; Andrew J Spakowitz; Yongli Zhang; Carlos Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-16       Impact factor: 11.205

3.  Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics.

Authors:  Jie Yan; Thomas J Maresca; Dunja Skoko; Christian D Adams; Botao Xiao; Morten O Christensen; Rebecca Heald; John F Marko
Journal:  Mol Biol Cell       Date:  2006-11-15       Impact factor: 4.138

4.  Pulling the chromatin.

Authors:  C Claudet; J Bednar
Journal:  Eur Phys J E Soft Matter       Date:  2006-03-14       Impact factor: 1.890

5.  Chromatin stability at low concentration depends on histone octamer saturation levels.

Authors:  Thomas A Hagerman; Qiang Fu; Benoit Molinié; James Denvir; Stuart Lindsay; Philippe T Georgel
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

6.  Nucleosome translational position, not histone acetylation, determines TFIIIA binding to nucleosomal Xenopus laevis 5S rRNA genes.

Authors:  L Howe; J Ausió
Journal:  Mol Cell Biol       Date:  1998-03       Impact factor: 4.272

7.  Driving proteins off DNA using applied tension.

Authors:  J F Marko; E D Siggia
Journal:  Biophys J       Date:  1997-10       Impact factor: 4.033

8.  Histone hyperacetylation can induce unfolding of the nucleosome core particle.

Authors:  R Oliva; D P Bazett-Jones; L Locklear; G H Dixon
Journal:  Nucleic Acids Res       Date:  1990-05-11       Impact factor: 16.971

9.  Isolation of an episomal yeast gene and replication origin as chromatin.

Authors:  D S Pederson; M Venkatesan; F Thoma; R T Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  1986-10       Impact factor: 11.205

10.  Histone hyperacetylation. Its effects on nucleosome core particle transitions.

Authors:  L J Libertini; J Ausió; K E van Holde; E W Small
Journal:  Biophys J       Date:  1988-04       Impact factor: 4.033

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