Literature DB >> 7177857

An interactive technique for the display of nucleic acid secondary structure.

B A Shapiro, L E Lipkin, J Maizel.   

Abstract

The ability to visualize nucleic acid secondary structure has become quite important since the advent of computer prediction and biochemical techniques that depict such structures. Manually drawing the conformations can be quite time consuming and tedious. Thus, the ability to draw with the aid of a computer the secondary structure of nucleic acid molecules is quite advantageous. This paper describes an interactive algorithm that permits one to generate such drawings which may then be used for further analysis and/or publications.

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Year:  1982        PMID: 7177857      PMCID: PMC326984          DOI: 10.1093/nar/10.21.7041

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  5 in total

1.  Computer method for predicting the secondary structure of single-stranded RNA.

Authors:  G M Studnicka; G M Rahn; I W Cummings; W A Salser
Journal:  Nucleic Acids Res       Date:  1978-09       Impact factor: 16.971

2.  Method for predicting RNA secondary structure.

Authors:  J M Pipas; J E McMahon
Journal:  Proc Natl Acad Sci U S A       Date:  1975-06       Impact factor: 11.205

3.  Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors:  M Zuker; P Stiegler
Journal:  Nucleic Acids Res       Date:  1981-01-10       Impact factor: 16.971

4.  Fast algorithm for predicting the secondary structure of single-stranded RNA.

Authors:  R Nussinov; A B Jacobson
Journal:  Proc Natl Acad Sci U S A       Date:  1980-11       Impact factor: 11.205

5.  Computer-aided prediction of RNA secondary structures.

Authors:  P E Auron; W P Rindone; C P Vary; J J Celentano; J N Vournakis
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

  5 in total
  3 in total

1.  Generating non-overlapping displays of nucleic acid secondary structure.

Authors:  B A Shapiro; J Maizel; L E Lipkin; K Currey; C Whitney
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

2.  R2R--software to speed the depiction of aesthetic consensus RNA secondary structures.

Authors:  Zasha Weinberg; Ronald R Breaker
Journal:  BMC Bioinformatics       Date:  2011-01-04       Impact factor: 3.169

3.  R-CHIE: a web server and R package for visualizing RNA secondary structures.

Authors:  Daniel Lai; Jeff R Proctor; Jing Yun A Zhu; Irmtraud M Meyer
Journal:  Nucleic Acids Res       Date:  2012-03-19       Impact factor: 16.971

  3 in total

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