Literature DB >> 7145716

13C NMR relaxation and conformational flexibility of the deoxyribose ring.

G C Levy, D J Craik, Y C Chou, R E London.   

Abstract

13C T1's and NOE's have been measured for all protonated carbons of 2'-deoxy-D-ribose (2'-d-ribose), 2'-deoxyadenosine-5'-monophosphate (5'-dAMP), thymidine-3'-monophosphate (3'-TMP) and thymidine-5'-monophosphate (5'-TMP) in D2O solutions. In all of the deoxy sugars examined, NT1 values for C-2' are significantly larger than the values for the remaining carbons. This result is interpreted in terms of rapid puckering motion of C-2'. By contrast, NT1 values measured in ribose are found to be equal, within experimental error. The results are compared with analogous data obtained for the five membered pyrrolidine ring of proline and with results for DNA itself.

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Year:  1982        PMID: 7145716      PMCID: PMC320951          DOI: 10.1093/nar/10.19.6067

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

1.  A 13C spin-lattice relaxation study of dipeptides containing glycine and proline: mobility of the cyclic proline side chain.

Authors:  E T Fossel; K R Easwaran; E R Blout
Journal:  Biopolymers       Date:  1975-05       Impact factor: 2.505

2.  A theoretical estimate of the energy barriers between stable conformations of the proline dimer.

Authors:  C M Venkatachalam; B J Price; S Krimm
Journal:  Biopolymers       Date:  1975-06       Impact factor: 2.505

3.  Determination of the activation energy for pseudorotation of the furanose ring in nucleosides by 13-C nuclear-magnetic-resonance relaxation.

Authors:  O Röder; H Lüdemann; E Von Goldammer
Journal:  Eur J Biochem       Date:  1975-05-06

4.  Nuclear magnetic resonance studies of pyridine dinucleotides.7.1 The solution conformational dynamics of the adenosine portion of nicotinamide adenine dinucleotide and other related purine containing compounds.

Authors:  A P Zens; T A Bryson; R B Dunlap; R R Fisher; P D Ellis
Journal:  J Am Chem Soc       Date:  1976-11-24       Impact factor: 15.419

5.  13C and 1H nuclear magnetic resonance studies of bradykinin and selected peptide fragments.

Authors:  R E London; J M Stewart; J R Cann; N A Matwiyoff
Journal:  Biochemistry       Date:  1978-06-13       Impact factor: 3.162

6.  Conformational mobility of the pyrrolidine ring of proline in peptides and peptide hormones as manifest in carbon 13 spin-lattice relaxation times.

Authors:  R Deslauriers; I C Smith; R Walter
Journal:  J Biol Chem       Date:  1974-11-10       Impact factor: 5.157

7.  Conformational analysis of the sugar ring in nucleosides and nucleotides. Improved method for the interpretation of proton magnetic resonance coupling constants.

Authors:  C Altona; M Sundaralingam
Journal:  J Am Chem Soc       Date:  1973-04-04       Impact factor: 15.419

8.  Conformational analysis of the sugar ring in nucleosides and nucleotides. A new description using the concept of pseudorotation.

Authors:  C Altona; M Sundaralingam
Journal:  J Am Chem Soc       Date:  1972-11-15       Impact factor: 15.419

9.  Proton magnetic resonance studies of 2'-,3'-, and 5'-deoxyadenosine conformations in solution.

Authors:  E Westhof; H Plach; I Cuno; H D Lüdemann
Journal:  Nucleic Acids Res       Date:  1977-04       Impact factor: 16.971

10.  Nuclear magnetic resonance studies of 2'- and 3'-ribonucleotide structures in solution.

Authors:  D B Davies; S S Danyluk
Journal:  Biochemistry       Date:  1975-02-11       Impact factor: 3.162

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