Literature DB >> 7145709

Correlation between glycosyl torsion angle and sugar ring pucker does not always exist.

J N Low, P Tollin, H R Wilson.   

Abstract

A survey of the conformational parameters of deoxypyrimidine nucleosides and nucleotides shows that the correlation between glycosyl torsion angle and sugar pucker, which has often been considered to be well-established, does not always exist. This may be of significance when interactions between DNA and other molecules are considered.

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Year:  1982        PMID： 7145709      PMCID： PMC320909          DOI： 10.1093/nar/10.18.5599

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  16 in total

1.  Molecular structure of a deoxyribose-dinucleotide, sodium thymidylyl-(5' yields to 3')-thymidylate-(5') hydrate (pTpT), and a possible structural model for polythymidylate.

Authors:  N Camerman; J K Fawcett; A Cameran
Journal:  J Mol Biol       Date:  1976-11-15       Impact factor: 5.469

2.  Nucleic acid-mutagen interactions: crystal structure of adenylyl-3',5'-uridine plus 9-aminoacridine.

Authors:  N C Seeman; R O Day; A Rich
Journal:  Nature       Date:  1975-01-31       Impact factor: 49.962

3.  Visualization of drug-nucleic acid interactions at atomic resolution. I. Structure of an ethidium/dinucleoside monophosphate crystalline complex, ethidium:5-iodouridylyl (3'-5') adenosine.

Authors:  C C Tsai; S C Jain; H M Sobell
Journal:  J Mol Biol       Date:  1977-08-15       Impact factor: 5.469

4.  Conformational analysis of the sugar ring in nucleosides and nucleotides. A new description using the concept of pseudorotation.

Authors:  C Altona; M Sundaralingam
Journal:  J Am Chem Soc       Date:  1972-11-15       Impact factor: 15.419

5.  Conservation of conformation in mono and poly-nucleotides.

Authors:  S Arnott; D W Hukins
Journal:  Nature       Date:  1969-11-29       Impact factor: 49.962

6.  Changes in nucleoside conformation.

Authors:  H R Wilson
Journal:  Nature       Date:  1970-02-07       Impact factor: 49.962

7.  Crystallographic refinement of yeast phenylalanine transfer RNA at 2-5A resolution.

Authors:  A Jack; J E Ladner; A Klug
Journal:  J Mol Biol       Date:  1976-12-25       Impact factor: 5.469

8.  The crystal structure of a hydrogen bonded complex of deoxyguanosine and 5-bromodeoxycytidine.

Authors:  A E Haschemeyer; H M Sobell
Journal:  Acta Crystallogr       Date:  1965-07-10

9.  Stereochemistry of nucleic acids and their constituents. XVII. Crystal and molecular structure of deoxycytidine 5'-phosphate monohydrate. A possible puckering for the furanoside ring in B-deoxyribonucleic acid.

Authors:  M A Viswamitra; B S Reddy; G H Lin; M Sundaralingam
Journal:  J Am Chem Soc       Date:  1971-09-08       Impact factor: 15.419

10.  Mutagen-nucleic acid intercalative binding: structure of a 9-aminoacridine: 5-iodocytidylyl(3'-5')guanosine crystalline complex.

Authors:  T D Sakore; S C Jain; C C Tsai; H M Sobell
Journal:  Proc Natl Acad Sci U S A       Date:  1977-01       Impact factor: 11.205
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  3 in total

1.  A comparison of the conformations adopted by some 5-bromovinyl-2'-deoxyuridines and a correlation with their antiviral properties: an X-ray study.

Authors:  L Párkányi; A Kálmán; M Czugler; T Kovács; R T Walker
Journal:  Nucleic Acids Res       Date:  1987-05-26       Impact factor: 16.971

2.  Stacking in RNA: NMR of Four Tetramers Benchmark Molecular Dynamics.

Authors:  David E Condon; Scott D Kennedy; Brendan C Mort; Ryszard Kierzek; Ilyas Yildirim; Douglas H Turner
Journal:  J Chem Theory Comput       Date:  2015-04-16       Impact factor: 6.006

3.  Optimization of an AMBER force field for the artificial nucleic acid, LNA, and benchmarking with NMR of L(CAAU).

Authors:  David E Condon; Ilyas Yildirim; Scott D Kennedy; Brendan C Mort; Ryszard Kierzek; Douglas H Turner
Journal:  J Phys Chem B       Date:  2014-01-24       Impact factor: 2.991
  3 in total

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