Literature DB >> 7041094

A pseudogene cluster in the leader region of the Euglena chloroplast 16S-23S rRNA genes.

T Miyata, R Kikuno, Y Ohshima.   

Abstract

The nucleotide sequence of a region (leader region) preceding the 5'-end of 16S-23S rRNA gene region of Euglena gracilis chloroplast DNA was compared with the homologous sequences that code for the 16S-23S rRNA operons of Euglena and E. coli. The leader region shows close homology in sequence to the 16S-23S rRNA gene region of Euglena (Orozco et al. (1980) J. Biol.Chem. 255, 10997-11003) as well as to the rrnD operon of E. coli, suggesting that it was derived from the 16S-23S rRNA gene region by gene duplication. It was shown that the leader region had accumulated nucleotide substitutions at an extremely rapid rate in its entirety, similar to the rate of tRNAIle pseudogene identified in the leader region. In addition, the leader region shows an unique base content which is quite distinct from those of 16S-23S rRNA gene regions of Euglena and E. coli, but again is similar to that of the tRNAIle pseudogene. The above two results strongly suggest that the leader region contains a pseudogene cluster which was derived from a gene cluster coding for the functional 16S-23S rRNA operon possibly by imperfect duplication during evolution of Euglena chloroplast DNA.

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Year:  1982        PMID: 7041094      PMCID: PMC320565          DOI: 10.1093/nar/10.5.1771

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  25 in total

1.  Sequence of the 16 S-23 s spacer region in two ribosomal RNA operons of Escherichia coli.

Authors:  R A Young; R Macklis; J A Steitz
Journal:  J Biol Chem       Date:  1979-05-10       Impact factor: 5.157

2.  A pseudogene structure in 5S DNA of Xenopus laevis.

Authors:  C Jacq; J R Miller; G G Brownlee
Journal:  Cell       Date:  1977-09       Impact factor: 41.582

3.  DNA sequence organization of the beta-globin complex in the BALB/c mouse.

Authors:  C L Jahn; C A Hutchison; S J Phillips; S Weaver; N L Haigwood; C F Voliva; M H Edgell
Journal:  Cell       Date:  1980-08       Impact factor: 41.582

4.  A mouse alpha-globin-related pseudogene lacking intervening sequences.

Authors:  E F Vanin; G I Goldberg; P W Tucker; O Smithies
Journal:  Nature       Date:  1980-07-17       Impact factor: 49.962

5.  Anatomy of the chloroplast ribosomal DNA of Chlamydomonas reinhardii.

Authors:  J D Rochaix; P Malnoe
Journal:  Cell       Date:  1978-10       Impact factor: 41.582

6.  The isolation of the beta A-, beta C-, and gamma-globin genes and a presumptive embryonic globin gene from a goat DNA recombinant library.

Authors:  J R Haynes; P Rosteck; E A Schon; P M Gallagher; D J Burks; K Smith; J B Lingrel
Journal:  J Biol Chem       Date:  1980-07-10       Impact factor: 5.157

7.  Unusual alpha-globin-like gene that has cleanly lost both globin intervening sequences.

Authors:  Y Nishioka; A Leder; P Leder
Journal:  Proc Natl Acad Sci U S A       Date:  1980-05       Impact factor: 11.205

8.  Sequence of the gene for isoleucine tRNA1 and the surrounding region in a ribosomal RNA operon of Escherichia coli.

Authors:  T Sekiya; S Nishimura
Journal:  Nucleic Acids Res       Date:  1979-02       Impact factor: 16.971

9.  The structure of a human alpha-globin pseudogene and its relationship to alpha-globin gene duplication.

Authors:  N J Proudfoot; T Maniatis
Journal:  Cell       Date:  1980-09       Impact factor: 41.582

10.  Nucleotide sequence of Xenopus borealis oocyte 5S DNA: comparison of sequences that flank several related eucaryotic genes.

Authors:  L J Korn; D D Brown
Journal:  Cell       Date:  1978-12       Impact factor: 41.582

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  4 in total

1.  Molecular archaeology of the mitochondrial genome.

Authors:  R Obar; J Green
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

2.  Nucleotide sequence of a 'truncated rRNA operon' of the Euglena gracilis chloroplast genome.

Authors:  E Roux; L Graf; E Stutz
Journal:  Nucleic Acids Res       Date:  1983-04-11       Impact factor: 16.971

3.  Molecular clock of silent substitution: at least six-fold preponderance of silent changes in mitochondrial genes over those in nuclear genes.

Authors:  T Miyata; H Hayashida; R Kikuno; M Hasegawa; M Kobayashi; K Koike
Journal:  J Mol Evol       Date:  1982       Impact factor: 2.395

4.  Sequence and evolution of the regions between thr rrn operons in the chloroplast genome of Euglena gracilis bacillaris.

Authors:  M R El-Gewely; R B Helling; J G Dibbits
Journal:  Mol Gen Genet       Date:  1984
  4 in total

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