Literature DB >> 7034036

Can free energy transduction be localized at some crucial part of the enzymatic cycle?

T L Hill, E Eisenberg.   

Abstract

Free energy transfer from one small molecule (ligand, substrate, etc.) to another can in general be comprehended only in terms of complete kinetic cycles, not in terms of an individual transition in the cycle, or of a single 'energized' state in the cycle, or of binding strengths of the small molecules on the enzyme, or of their standard chemical potentials when bound. The reason these latter approaches fail is that the enzyme molecule is as much a specific participant in the step by step proceedings as are the small molecules; small molecule free energies cannot be separated from enzyme contributions or, in general, from each other except at the complete cycle level. It is possible to follow the 'flow' of the total free energy of enzyme + small molecules among various subdivisions or categories, as the system proceeds through the states of the transducing cycle. These categories can be understood in molecular terms but several of them involve the enzyme in a way that is inseparable from the small molecules. Hence this procedure also, does not allow localization within the cycle of the supposed point of transfer of free energy from one small molecule to another.

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Year:  1981        PMID: 7034036     DOI: 10.1017/s0033583500002468

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  23 in total

1.  Analysis of functional motions in Brownian molecular machines with an efficient block normal mode approach: myosin-II and Ca2+ -ATPase.

Authors:  Guohui Li; Qiang Cui
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

2.  Brush border myosin-I structure and ADP-dependent conformational changes revealed by cryoelectron microscopy and image analysis.

Authors:  J D Jontes; R A Milligan
Journal:  J Cell Biol       Date:  1997-11-03       Impact factor: 10.539

3.  Voltage dependence of the Chara proton pump revealed by current-voltage measurement during rapid metabolic blockade with cyanide.

Authors:  M R Blatt; M J Beilby; M Tester
Journal:  J Membr Biol       Date:  1990-04       Impact factor: 1.843

4.  Force generation, work, and coupling in molecular motors.

Authors:  R M Krupka
Journal:  Biophys J       Date:  1996-04       Impact factor: 4.033

5.  Mechanisms for achieving high speed and efficiency in biomolecular machines.

Authors:  Jason A Wagoner; Ken A Dill
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-08       Impact factor: 11.205

Review 6.  Energy coupling and Hill cycles in enzymatic processes.

Authors:  F Kamp; G R Welch; H V Westerhoff
Journal:  Cell Biophys       Date:  1988 Jan-Jun

Review 7.  Energy coupling and thermokinetic balancing in enzyme kinetics. Microscopic reversibility and detailed balance revisited.

Authors:  D Walz; S R Caplan
Journal:  Cell Biophys       Date:  1988 Jan-Jun

8.  The mutual binding exclusion mechanism in active transport across biological membranes.

Authors:  G Inesi
Journal:  Cell Biophys       Date:  1987-12

9.  A master switch couples Mg²⁺-assisted catalysis to domain motion in B. stearothermophilus tryptophanyl-tRNA Synthetase.

Authors:  Violetta Weinreb; Li Li; Charles W Carter
Journal:  Structure       Date:  2012-01-11       Impact factor: 5.006

10.  Interpretation of steady-state current-voltage curves: consequences and implications of current subtraction in transport studies.

Authors:  M R Blatt
Journal:  J Membr Biol       Date:  1986       Impact factor: 1.843

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