Literature DB >> 7012833

Feedback regulation of ribosomal protein gene expression in Escherichia coli: structural homology of ribosomal RNA and ribosomal protein MRNA.

M Nomura, J L Yates, D Dean, L E Post.   

Abstract

Certain ribosomal proteins (r proteins) in Escherichia coli, such as S4 and S7, function as feedback repressors in the regulation of r-protein synthesis. These proteins inhibit the translation of their own mRNA. The repressor r proteins so far identified are also known to bind specifically to rRNA at an initial stage in ribosome assembly. We have found structural homology between the S7 binding region on 16S rRNA and a region of the mRNA where S7 acts as a translational repressor. Similarly, there is structural homology between one of the reported S4 binding regions on 16S rRNA and the mRNA target site for S4. The observed homology supports the concept that regulation by repressor r proteins is based on competition between rRNA and mRNA for these proteins and that the same structural features and of the r proteins are used in their interactions with both rRNA and mRNA.

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Year:  1980        PMID: 7012833      PMCID: PMC350445          DOI: 10.1073/pnas.77.12.7084

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  DNA sequences of promoter regions for the str and spc ribosomal protein operons in E. coli.

Authors:  L E Post; A E Arfsten; F Reusser; M Nomura
Journal:  Cell       Date:  1978-09       Impact factor: 41.582

2.  Characterization of the regions from E. coli 16 S RNA covalently linked to ribosomal proteins S4 and S20 after ultraviolet irradiation.

Authors:  B Ehresmann; C Backendorf; C Ehresmann; J P Ebel
Journal:  FEBS Lett       Date:  1977-06-15       Impact factor: 4.124

3.  Computer analysis of nucleic acid regulatory sequences.

Authors:  L J Korn; C L Queen; M N Wegman
Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205

4.  The sequence of Escherichia coli ribosomal 16 S RNA determined by new rapid gel methods.

Authors:  P Carbon; C Ehresmann; B Ehresmann; J P Ebel
Journal:  FEBS Lett       Date:  1978-10-01       Impact factor: 4.124

5.  Electron microscopic determination of the binding sites of ribosomal proteins S4 and S8 on 16S RNA.

Authors:  M D Cole; M Beer; T Koller; W A Strycharz; M Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  1978-01       Impact factor: 11.205

6.  Purification and characterization of AUA specific isoleucine transfer ribonucleic acid from Escherichia coli B.

Authors:  F Harada; S Nishimura
Journal:  Biochemistry       Date:  1974-01-15       Impact factor: 3.162

7.  Improved estimation of secondary structure in ribonucleic acids.

Authors:  I Tinoco; P N Borer; B Dengler; M D Levin; O C Uhlenbeck; D M Crothers; J Bralla
Journal:  Nat New Biol       Date:  1973-11-14

8.  Direct physical evidence for secondary structure in an isolated fragment of R17 bacteriophage mRNA.

Authors:  J Gralla; J A Steitz; D M Crothers
Journal:  Nature       Date:  1974-03-15       Impact factor: 49.962

9.  The sequence of nucleotides in tRNA Ile from E. coli B.

Authors:  M Yarus; B G Barrell
Journal:  Biochem Biophys Res Commun       Date:  1971-05-21       Impact factor: 3.575

10.  Assembly mapping of 30S ribosomal proteins from E. coli.

Authors:  S Mizushima; M Nomura
Journal:  Nature       Date:  1970-06-27       Impact factor: 49.962

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  90 in total

1.  Crystal structure of ribosomal protein L4 shows RNA-binding sites for ribosome incorporation and feedback control of the S10 operon.

Authors:  M Worbs; R Huber; M C Wahl
Journal:  EMBO J       Date:  2000-03-01       Impact factor: 11.598

2.  Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation.

Authors:  Magali Naville; Daniel Gautheret
Journal:  Genome Biol       Date:  2010-09-29       Impact factor: 13.583

3.  Translational feedback regulation of the gene for L35 in Escherichia coli requires binding of ribosomal protein L20 to two sites in its leader mRNA: a possible case of ribosomal RNA-messenger RNA molecular mimicry.

Authors:  Maude Guillier; Frédéric Allemand; Sophie Raibaud; Frédéric Dardel; Mathias Springer; Claude Chiaruttini
Journal:  RNA       Date:  2002-07       Impact factor: 4.942

4.  RNA-structural mimicry in Escherichia coli ribosomal protein L4-dependent regulation of the S10 operon.

Authors:  Ulrich Stelzl; Janice M Zengel; Marina Tovbina; Marquis Walker; Knud H Nierhaus; Lasse Lindahl; Dinshaw J Patel
Journal:  J Biol Chem       Date:  2003-05-08       Impact factor: 5.157

5.  Regulation of ribosomal protein mRNA content and translation in growth-stimulated mouse fibroblasts.

Authors:  P K Geyer; O Meyuhas; R P Perry; L F Johnson
Journal:  Mol Cell Biol       Date:  1982-06       Impact factor: 4.272

6.  The structure of a ribosomal protein S8/spc operon mRNA complex.

Authors:  Helen J Merianos; Jimin Wang; Peter B Moore
Journal:  RNA       Date:  2004-06       Impact factor: 4.942

7.  The cyanelle str operon from Cyanophora paradoxa: sequence analysis and phylogenetic implications.

Authors:  M Kraus; M Götz; W Löffelhardt
Journal:  Plant Mol Biol       Date:  1990-10       Impact factor: 4.076

8.  Negative regulation of beta and beta' synthesis by RNA polymerase.

Authors:  H Lang-Yang; G Zubay
Journal:  Mol Gen Genet       Date:  1981

9.  Nucleotide sequence of the rpoA-rplQ DNA of Escherichia coli: a second regulatory binding site for protein S4?

Authors:  D W Meek; R S Hayward
Journal:  Nucleic Acids Res       Date:  1984-07-25       Impact factor: 16.971

10.  Chemical and functional characterization of an altered form of ribosomal protein S4 derived from a strain of E. coli defective in auto-regulation of the alpha operon.

Authors:  L M Changchien; R C Conrad; G R Craven
Journal:  Nucleic Acids Res       Date:  1986-09-11       Impact factor: 16.971

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