Literature DB >> 6964395

Nonrandom distribution of repeated DNA sequences with respect to supercoiled loops and the nuclear matrix.

D Small, B Nelkin, B Vogelstein.   

Abstract

The DNA in a eukaryotic nucleus is arranged into a series of supercoiled loops that are anchored at their bases to the nuclear matrix. We have analyzed the DNA sequences that are closest to the matrix attachment points for their relative content of specific repeated sequences. Sequences were enriched (mouse satellite, human Alu family) or depleted (mouse EcoRI repeat, monkey alpha component), depending on the specific sequence and species examined. These results can be understood in terms of a nonrandom arrangement of DNA sequences with respect to nuclear DNA loops.

Entities:  

Mesh：

Substances：

Year:  1982        PMID： 6964395      PMCID： PMC347020          DOI： 10.1073/pnas.79.19.5911

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  40 in total

1.  Long range periodicities in mouse satellite DNA.

Authors:  E M Southern
Journal:  J Mol Biol       Date:  1975-05-05       Impact factor: 5.469

2.  Repetitive primate DNA containing the recognition sequences for two restriction endonucleases which generate cohesive ends.

Authors:  P Gruss; G Sauer
Journal:  FEBS Lett       Date:  1975-12-01       Impact factor: 4.124

3.  Subnuclear redistribution of DNA species in confluent and growing mammalian cells.

Authors:  D M Kurnit; J J Maio
Journal:  Chromosoma       Date:  1973-05-14       Impact factor: 4.316

4.  Isolation and characterization of mouse and guinea pig satellite deoxyribonucleic acids.

Authors:  G Corneo; E Ginelli; C Soave; G Bernardi
Journal:  Biochemistry       Date:  1968-12       Impact factor: 3.162

5.  Chromosomal localization of mouse satellite DNA.

Authors:  M L Pardue; J G Gall
Journal:  Science       Date:  1970-06-12       Impact factor: 47.728

6.  Hemoglobin synthesis in murine virus-induced leukemic cells in vitro: stimulation of erythroid differentiation by dimethyl sulfoxide.

Authors:  C Friend; W Scher; J G Holland; T Sato
Journal:  Proc Natl Acad Sci U S A       Date:  1971-02       Impact factor: 11.205

7.  Specificity of DNase I. Estimation of nucleosides present at the 5'-phosphate terminus of a limit digest of DNA by DNase I.

Authors:  M Matsuda; H Ogoshi
Journal:  J Biochem       Date:  1966-03       Impact factor: 3.387

8.  Nucleotide sequence repetition: a rapidly reassociating fraction of mouse DNA.

Authors:  M Waring; R J Britten
Journal:  Science       Date:  1966-11-11       Impact factor: 47.728

9.  Some properties of the single strands isolated from the DNA of the nuclear satellite of the mouse (Mus musculus).

Authors:  W G Flamm; P M Walker; M McCallum
Journal:  J Mol Biol       Date:  1969-03-28       Impact factor: 5.469

10.  Supercoils in human DNA.

Authors:  P R Cook; I A Brazell
Journal:  J Cell Sci       Date:  1975-11       Impact factor: 5.285
View more
  18 in total

1.  Conserved characteristics of heterochromatin-forming DNA at the 15q11-q13 imprinting center.

Authors:  J M Greally; T A Gray; J M Gabriel; L Song; S Zemel; R D Nicholls
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  Nuclear matrix attachment occurs in several regions of the IgH locus.

Authors:  P N Cockerill
Journal:  Nucleic Acids Res       Date:  1990-05-11       Impact factor: 16.971

Review 3.  Heterochromatin instability in cancer: from the Barr body to satellites and the nuclear periphery.

Authors:  Dawn M Carone; Jeanne B Lawrence
Journal:  Semin Cancer Biol       Date:  2012-06-18       Impact factor: 15.707

Review 4.  Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved "chromatin folding code".

Authors:  P Vogt
Journal:  Hum Genet       Date:  1990-03       Impact factor: 4.132

5.  Conservation in the 5' region of the long interspersed mouse L1 repeat: implications of comparative sequence analysis.

Authors:  E Mottez; P K Rogan; L Manuelidis
Journal:  Nucleic Acids Res       Date:  1986-04-11       Impact factor: 16.971

6.  Chromatin loop structure of the human X chromosome: relevance to X inactivation and CpG clusters.

Authors:  A H Beggs; B R Migeon
Journal:  Mol Cell Biol       Date:  1989-06       Impact factor: 4.272

7.  Mice with an isoform-ablating Mecp2 exon 1 mutation recapitulate the neurologic deficits of Rett syndrome.

Authors:  Dag H Yasui; Michael L Gonzales; Justin O Aflatooni; Florence K Crary; Daniel J Hu; Bryant J Gavino; Mari S Golub; John B Vincent; N Carolyn Schanen; Carl O Olson; Mojgan Rastegar; Janine M Lasalle
Journal:  Hum Mol Genet       Date:  2013-12-18       Impact factor: 6.150

8.  Ribosomal DNA sequences attached to the nuclear matrix.

Authors:  H C Smith; L I Rothblum
Journal:  Biochem Genet       Date:  1987-12       Impact factor: 1.890

9.  A large deletion encompassing the entire alpha-like globin gene cluster in a family of northern European extraction.

Authors:  P Fortina; K Delgrosso; E Rappaport; M Poncz; S K Ballas; E Schwartz; S Surrey
Journal:  Nucleic Acids Res       Date:  1988-12-09       Impact factor: 16.971

10.  Specific DNA sequences associated with the nuclear matrix in synchronized mouse 3T3 cells.

Authors:  G I Goldberg; I Collier; A Cassel
Journal:  Proc Natl Acad Sci U S A       Date:  1983-11       Impact factor: 11.205
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.