Literature DB >> 6964394

DNA motions in the nucleosome core particle.

J Wang, M Hogan, R H Austin.   

Abstract

We have used time-resolved triplet state anisotropy decay techniques to measure the conformational flexibility of DNA in the nucleosome. From these measurements we conclude that, in a nucleosome, the DNA helix experiences substantial internal flexibility, which occurs with a time constant near 30 nsec. We find that our data can be fit well by a modified version of the Barkley-Zimm model for DNA motion, allowing only DNA twisting motions and the overall tumbling of the nucleosome. That fit yields a calculated torsional rigidity equal to 1.8 X 10(-19) erg X cm, a value equal to that measured for uncomplexed DNA. We conclude from such similarity that large, fast twisting motions of the DNA helix persist, nearly unaltered, when DNA is wrapped to form a nucleosome.

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Year:  1982        PMID: 6964394      PMCID: PMC347017          DOI: 10.1073/pnas.79.19.5896

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Measurement of protein rotational diffusion in membranes by flash photolysis.

Authors:  R J Cherry
Journal:  Methods Enzymol       Date:  1978       Impact factor: 1.600

2.  Structure of nucleosome core particles of chromatin.

Authors:  J T Finch; L C Lutter; D Rhodes; R S Brown; B Rushton; M Levitt; A Klug
Journal:  Nature       Date:  1977-09-01       Impact factor: 49.962

3.  Internal motions in DNA.

Authors:  M E Hogan; O Jardetzky
Journal:  Proc Natl Acad Sci U S A       Date:  1979-12       Impact factor: 11.205

4.  1H NMR investigation of the conformational states of DNA in nucleosome core particles.

Authors:  J Feigon; D R Kearns
Journal:  Nucleic Acids Res       Date:  1979       Impact factor: 16.971

5.  31P NMR studies of the solution structure and dynamics of nucleosomes and DNA.

Authors:  L Klevan; I M Armitage; D M Crothers
Journal:  Nucleic Acids Res       Date:  1979-04       Impact factor: 16.971

6.  Decay of fluorescence emission anisotropy of the ethidium bromide-DNA complex. Evidence for an internal motion in DNA.

Authors:  P Wahl; J Paoletti; J B Le Pecq
Journal:  Proc Natl Acad Sci U S A       Date:  1970-02       Impact factor: 11.205

7.  Transient electric dichroism studies of the structure of the DNA complex with intercalated drugs.

Authors:  M Hogan; N Dattagupta; D M Crothers
Journal:  Biochemistry       Date:  1979-01-23       Impact factor: 3.162

8.  Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: evidence for a DNA superhelix.

Authors:  L C Lutter
Journal:  J Mol Biol       Date:  1978-09-15       Impact factor: 5.469

9.  Transient electric dichroism studies of nucleosomal particles.

Authors:  D M Crothers; N Dattagupta; M Hogan; L Klevan; K S Lee
Journal:  Biochemistry       Date:  1978-10-17       Impact factor: 3.162

10.  Unfolding of nucleosomes by ethidium binding.

Authors:  H M Wu; N Dattagupta; M Hogan; D M Crothers
Journal:  Biochemistry       Date:  1980-02-19       Impact factor: 3.162

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  11 in total

1.  Methylene blue photosensitised strand cleavage of DNA: effects of dye binding and oxygen.

Authors:  C OhUigin; D J McConnell; J M Kelly; W J van der Putten
Journal:  Nucleic Acids Res       Date:  1987-09-25       Impact factor: 16.971

2.  Binding of ethidium bromide causes dissociation of the nucleosome core particle.

Authors:  C T McMurray; K E van Holde
Journal:  Proc Natl Acad Sci U S A       Date:  1986-11       Impact factor: 11.205

3.  Fluorescence recovery spectroscopy as a probe of slow rotational motions.

Authors:  W A Wegener
Journal:  Biophys J       Date:  1984-12       Impact factor: 4.033

4.  DNA cruciforms facilitate in vitro strand transfer on nucleosomal templates.

Authors:  H Kotani; E B Kmiec
Journal:  Mol Gen Genet       Date:  1994-06-15

5.  Double-beam autocompensation for fluorescence polarization measurements in flow cytometry.

Authors:  W Beisker; W G Eisert
Journal:  Biophys J       Date:  1985-05       Impact factor: 4.033

6.  Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes.

Authors:  Brian C Beard; Samuel H Wilson; Michael J Smerdon
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-10       Impact factor: 11.205

7.  Site-specific carcinogen binding to DNA.

Authors:  T C Boles; M E Hogan
Journal:  Proc Natl Acad Sci U S A       Date:  1984-09       Impact factor: 11.205

8.  Intramitochondrial dyes allow selective in vitro photolysis of carcinoma cells.

Authors:  A R Oseroff; D Ohuoha; G Ara; D McAuliffe; J Foley; L Cincotta
Journal:  Proc Natl Acad Sci U S A       Date:  1986-12       Impact factor: 11.205

9.  The use of phenothiazine dyes to inactivate bovine viral diarrhea virus in goat colostrum.

Authors:  Kevin E Washburn; Robert N Streeter; Jeremiah T Saliki; Terry W Lehenbauer
Journal:  Can J Vet Res       Date:  2004-04       Impact factor: 1.310

10.  Identification of ultimate DNA damaging oxygen species.

Authors:  B Epe; J Hegler; D Wild
Journal:  Environ Health Perspect       Date:  1990-08       Impact factor: 9.031

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