Literature DB >> 6929502

Classification of cultured mammalian cells by shape analysis and pattern recognition.

A C Olson, N M Larson, C A Heckman.   

Abstract

We have developed a method for classifying cultured cells on the basis of shape characteristics. High-resolution optical information on three-dimensional shape was obtained by anodic oxide interferometry. Each interference order formed in a cell was considered as a closed figure; measurement of 37 mathematical descriptors was carried out for each figure. The individual cells were classified according to the values of their descriptors. We used standard principles of pattern recognition, such as hierarchical cluster analysis and nearest neighbor analysis, as a basis for ordering the cells into groups. Alternatively, linear discriminant functions could be used, but they provided only a slight improvement in correct classification of the cells. We anticipate that the method will be appropriate for classification of cultured cell lines and for determination of the magnitude and direction of cell shape changes implicated in various biological processes.

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Year:  1980        PMID: 6929502      PMCID: PMC348526          DOI: 10.1073/pnas.77.3.1516

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  Surface morphology and nucleoside phosphatase activity of rat liver epithelial cells during oncogenic transformation in vitro.

Authors:  S Karasaki; A Simard; G de Lamirande
Journal:  Cancer Res       Date:  1977-10       Impact factor: 12.701

2.  Spreading of normal and transformed fibroblasts in dense cultures.

Authors:  A P Cherny; J M Vasiliev; I M Gelfand
Journal:  Exp Cell Res       Date:  1975-02       Impact factor: 3.905

3.  The surface morphology of normal and malignant rat liver epithelial cells in culture.

Authors:  T D Allen; P T Iype
Journal:  In Vitro       Date:  1976-12

4.  Cytoplasmic and nuclear shape analysis for computerized cell recognition.

Authors:  J J Sychra; P H Bartels; J Taylor; M Bibbo; G L Wied
Journal:  Acta Cytol       Date:  1976 Jan-Feb       Impact factor: 2.319

5.  Defective formation of the lamellar cytoplasm by neoplastic fibroblasts (L cells-transformed cells-cell attachment-contact inhibition-scanning electron microscopy-microcinematography).

Authors:  L V Domnina; O Y Ivanova; L B Margolis; L V Olshevskaja; Y A Rovensky; J M Vasiliev; I M Gelfand
Journal:  Proc Natl Acad Sci U S A       Date:  1972-01       Impact factor: 11.205

6.  A versatile clustering algorithm with objective function and objective measure.

Authors:  J M Prewitt
Journal:  Comput Programs Biomed       Date:  1972-11

7.  Interactions among human blood proteins at interfaces.

Authors:  L Vroman; A L Adams; M Klings
Journal:  Fed Proc       Date:  1971 Sep-Oct

8.  The analysis of cell images.

Authors:  J M Prewitt; M L Mendelsohn
Journal:  Ann N Y Acad Sci       Date:  1966-01-31       Impact factor: 5.691

9.  Morphometric analysis of neoplastic transformation in rodent fibroblast cell lines.

Authors:  C H Fox; T Caspersson; J Kudynowski; K K Sanford; R E Tarone
Journal:  Cancer Res       Date:  1977-03       Impact factor: 12.701

10.  Topography of nonneoplastic and neoplastic cells of common origin.

Authors:  B Wetzel; K K Sanford; C H Fox; G M Jones; E W Westbrook; R E Tarone
Journal:  Cancer Res       Date:  1977-03       Impact factor: 12.701

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  5 in total

1.  Computer-enhanced video microscopy: digitally processed microscope images can be produced in real time.

Authors:  R J Walter; M W Berns
Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

Review 2.  Visualizing quantitative microscopy data: History and challenges.

Authors:  Heba Z Sailem; Sam Cooper; Chris Bakal
Journal:  Crit Rev Biochem Mol Biol       Date:  2016-02-24       Impact factor: 8.250

3.  Towards a bioinformatics of patterning: a computational approach to understanding regulative morphogenesis.

Authors:  Daniel Lobo; Taylor J Malone; Michael Levin
Journal:  Biol Open       Date:  2012-11-26       Impact factor: 2.422

4.  Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth.

Authors:  Martial Sankar; Kaisa Nieminen; Laura Ragni; Ioannis Xenarios; Christian S Hardtke
Journal:  Elife       Date:  2014-02-11       Impact factor: 8.140

5.  Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma.

Authors:  Jennifer Hannig; Hendrik Schäfer; Jörg Ackermann; Marie Hebel; Tim Schäfer; Claudia Döring; Sylvia Hartmann; Martin-Leo Hansmann; Ina Koch
Journal:  PLoS Comput Biol       Date:  2020-01-21       Impact factor: 4.475

  5 in total

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