Literature DB >> 6882888

Structural information from NMR secondary chemical shifts of peptide alpha C-H protons in proteins.

D C Dalgarno, B A Levine, R J Williams.   

Abstract

The secondary chemical shift experienced by the 1H-NMR resonances of the alpha C-H protons in proteins can be correlated with their backbone torsional angles psi, which dictate the orientation of the alpha C-H proton to the adjacent carbonyl group. It is shown that alpha C-H protons present in beta-sheet regions experience downfield secondary shifts, whereas those in alpha-helix regions experience upfield secondary shifts. The predictive use of this correlation in assignment studies is illustrated for the calcium-binding protein paravalbumin, for which a crystal structure is available, and troponin C, for which no crystallographic data are available.

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Year:  1983        PMID: 6882888     DOI: 10.1007/bf01121955

Source DB:  PubMed          Journal:  Biosci Rep        ISSN: 0144-8463            Impact factor:   3.840


  27 in total

1.  Turn stability in beta-hairpin peptides: Investigation of peptides containing 3:5 type I G1 bulge turns.

Authors:  Tamas Blandl; Andrea G Cochran; Nicholas J Skelton
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

2.  An empirical correlation between secondary structure content and averaged chemical shifts in proteins.

Authors:  Anaika B Sibley; Monique Cosman; V V Krishnan
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

Review 3.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

4.  An evaluation of chemical shift index-based secondary structure determination in proteins: influence of random coil chemical shifts.

Authors:  S P Mielke; V V Krishnan
Journal:  J Biomol NMR       Date:  2004-10       Impact factor: 2.835

5.  The value of chemical shift parameters in the description of protein solution structures.

Authors:  Y Gao; N C Veitch; R J Williams
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

6.  Tuning the properties of elastin mimetic hybrid copolymers via a modular polymerization method.

Authors:  Sarah E Grieshaber; Alexandra J E Farran; Shi Bai; Kristi L Kiick; Xinqiao Jia
Journal:  Biomacromolecules       Date:  2012-05-11       Impact factor: 6.988

Review 7.  The study of conformational states of proteins by nuclear magnetic resonance.

Authors:  I D Campbell; C M Dobson; R J Williams
Journal:  Biochem J       Date:  1985-10-01       Impact factor: 3.857

8.  The relationship between amide proton chemical shifts and secondary structure in proteins.

Authors:  T Asakura; K Taoka; M Demura; M P Williamson
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Application of the random coil index to studying protein flexibility.

Authors:  Mark V Berjanskii; David S Wishart
Journal:  J Biomol NMR       Date:  2007-11-06       Impact factor: 2.835

10.  Proton, carbon, and nitrogen chemical shifts accurately delineate differences and similarities in secondary structure between the homologous proteins IRAP and IL-1 beta.

Authors:  B J Stockman; T A Scahill; N A Strakalaitis; D P Brunner; A W Yem; M R Deibel
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

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