Literature DB >> 6856480

A double helix B-type geometry based on high-resolution proton NMR of single-helical DNA fragments: d(TA)5 x d(TA)5.

J R Mellema, P N van Kampen, C N Carlson, H E Bosshard, C Altona.   

Abstract

A single-helical B-type geometry is presented based on 1H NMR observations on d(TATA) and several other small single-helical DNA fragments. The structure is extended to one complete turn of double-helical DNA and its characteristics are compared with other known B-type structures.

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Year:  1983        PMID： 6856480      PMCID： PMC325931          DOI： 10.1093/nar/11.9.2893

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  16 in total

1.  Structural details of double-helix observed for DNAs containing alternating purine and pyrimidine sequences.

Authors:  S Arnott; R Chandrasekaran; D W Hukins; P J Smith; L Watts
Journal:  J Mol Biol       Date:  1974-09-15       Impact factor: 5.469

2.  Conformational analysis of the sugar ring in nucleosides and nucleotides. Improved method for the interpretation of proton magnetic resonance coupling constants.

Authors:  C Altona; M Sundaralingam
Journal:  J Am Chem Soc       Date:  1973-04-04       Impact factor: 15.419

3.  Refinement of the structure of B-DNA and implications for the analysis of x-ray diffraction data from fibers of biopolymers.

Authors:  S Arnott; D W Hukins
Journal:  J Mol Biol       Date:  1973-12-05       Impact factor: 5.469

4.  Optimised parameters for RNA double-helices.

Authors:  S Arnott; D W Hukins; S D Dover
Journal:  Biochem Biophys Res Commun       Date:  1972-09-26       Impact factor: 3.575

5.  Conformational analysis of the sugar ring in nucleosides and nucleotides. A new description using the concept of pseudorotation.

Authors:  C Altona; M Sundaralingam
Journal:  J Am Chem Soc       Date:  1972-11-15       Impact factor: 15.419

6.  Molecular structure of a left-handed double helical DNA fragment at atomic resolution.

Authors:  A H Wang; G J Quigley; F J Kolpak; J L Crawford; J H van Boom; G van der Marel; A Rich
Journal:  Nature       Date:  1979-12-13       Impact factor: 49.962

7.  Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure.

Authors:  R E Dickerson; H R Drew
Journal:  J Mol Biol       Date:  1981-07-15       Impact factor: 5.469

8.  Polymorphism of DNA double helices.

Authors:  A G Leslie; S Arnott; R Chandrasekaran; R L Ratliff
Journal:  J Mol Biol       Date:  1980-10-15       Impact factor: 5.469

9.  Complete assignment and conformational analysis of a deoxyribotetranucleotide. d(TAAT). A 360 and 500 Mhz NMR study.

Authors:  J R Mellema; C A Haasnoot; J H Van Boom; C Altona
Journal:  Biochim Biophys Acta       Date:  1981-09-28

10.  Conformational characteristics of the trinucleoside diphosphate dApdApdA and its constituents from nuclear magnetic resonance and circular dichroism studies. Extrapolation to the stacked conformers.

Authors:  C S Olsthoorn; L J Bostelaar; J H Van Boom; C Altona
Journal:  Eur J Biochem       Date:  1980-11
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  3 in total

1.  Computer graphics program to reveal the dependence of the gross three-dimensional structure of the B-DNA double helix on primary structure.

Authors:  C S Tung; S C Harvey
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

2.  Bulge-out structures in the single-stranded trimer AUA and in the duplex (CUGGUGCGG).(CCGCCCAG). A model-building and NMR study.

Authors:  Y T van den Hoogen; A A van Beuzekom; E de Vroom; G A van der Marel; J H van Boom; C Altona
Journal:  Nucleic Acids Res       Date:  1988-06-10       Impact factor: 16.971

3.  Conformational analysis of r(CGCGCG) in aqueous solution: an A-type double helical conformation studied by two-dimensional nuclear Overhauser effect spectroscopy.

Authors:  H P Westerink; G A van der Marel; J H van Boom; C A Haasnoot
Journal:  Nucleic Acids Res       Date:  1984-05-25       Impact factor: 16.971
  3 in total

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