Literature DB >> 6849883

Lanthanide-induced peptide folding: variations in lanthanide affinity and induced peptide conformation.

J Gariépy, B D Sykes, R S Hodges.   

Abstract

The present work has demonstrated the utility of the diamagnetic lanthanides lutetium and lanthanum as metal binding probes for a synthetic 13-residue fragment representing calcium binding site 3 of rabbit skeletal troponin C (residues 103-115). The peptide conformation induced by these metals was monitored by the proton magnetic resonance at 270 MHz. The peptide affinity for these rare earths is 50-400 times higher than that for calcium (KLu3+, 1.3 X 10(4) M-1; KLa3+, 1.1 X 10(5) M-1; KCa2+, 3 X 10(2) M-1) which is related to the change in cation charge from 2+ to 3+. The peptide conformation induced by the presence of La3+ generates a different 1H NMR spectrum than the one observed for the lutetium-saturated peptide. Thus, it appears that these metals do not fold the peptide into exactly the same conformation. The resonance shifts observed during the Lu3+ titration are much smaller than those seen in the case of La3+ addition. The fact that lutetium binds less tightly than lanthanum to the peptide may be linked directly or indirectly to the difference in ionic radius between these metals (Lu3+, 0.86 A; La3+, 1.03 A). This may in turn indicate that the peptide primary sequence encodes for some aspects of metal ion specificity. The 1H NMR results also demonstrate that glycine-108 adopts a restricted geometry in the absence of metal such that its two alpha-carbon protons are in different environments which are further affected by the addition of either metal. These observations support the concept that geometric constraints arising from the particular peptide folding pattern near this residue correlate with the highly conserved nature of this site of the EF hand. This position remains occupied by glycine in most EF hand domains with the exception of known distorted calcium binding sites present in intestine calcium binding proteins and S-100.

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Year:  1983        PMID: 6849883     DOI: 10.1021/bi00277a004

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  DNA targeting and cleavage by an engineered metalloprotein dimer.

Authors:  Siu Wah Wong-Deyrup; Charulata Prasannan; Cynthia M Dupureur; Sonya J Franklin
Journal:  J Biol Inorg Chem       Date:  2011-11-25       Impact factor: 3.358

2.  Role of interchain alpha-helical hydrophobic interactions in Ca2+ affinity, formation, and stability of a two-site domain in troponin C.

Authors:  O D Monera; G S Shaw; B Y Zhu; B D Sykes; C M Kay; R S Hodges
Journal:  Protein Sci       Date:  1992-07       Impact factor: 6.725

3.  Phosphorylation-dependent protein design: design of a minimal protein kinase-inducible domain.

Authors:  Feng Gao; Blair S Thornley; Caitlin M Tressler; Devan Naduthambi; Neal J Zondlo
Journal:  Org Biomol Chem       Date:  2019-04-17       Impact factor: 3.876

4.  Human S100b protein: formation of a tetramer from synthetic calcium-binding site peptides.

Authors:  C Donaldson; K R Barber; C M Kay; G S Shaw
Journal:  Protein Sci       Date:  1995-04       Impact factor: 6.725

5.  Intrinsic Ca2+ affinities of peptides: application of the kinetic method to analogs of calcium-binding site III of rabbit skeletal troponin C.

Authors:  O V Nemirovskiy; M L Gross
Journal:  J Am Soc Mass Spectrom       Date:  2000-09       Impact factor: 3.109

6.  Characterization of a helix-loop-helix (EF hand) motif of silver hake parvalbumin isoform B.

Authors:  S P Revett; G King; J Shabanowitz; D F Hunt; K L Hartman; T M Laue; D J Nelson
Journal:  Protein Sci       Date:  1997-11       Impact factor: 6.725

7.  Lanthanide-binding helix-turn-helix peptides: solution structure of a designed metallonuclease.

Authors:  Joel T Welch; William R Kearney; Sonya J Franklin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-18       Impact factor: 11.205

8.  Relative stabilities of synthetic peptide homo- and heterodimeric troponin-C domains.

Authors:  G S Shaw; R S Hodges; C M Kay; B D Sykes
Journal:  Protein Sci       Date:  1994-07       Impact factor: 6.725

9.  Efficient synthesis and in vivo incorporation of acridon-2-ylalanine, a fluorescent amino acid for lifetime and Förster resonance energy transfer/luminescence resonance energy transfer studies.

Authors:  Lee C Speight; Anand K Muthusamy; Jacob M Goldberg; John B Warner; Rebecca F Wissner; Taylor S Willi; Bradley F Woodman; Ryan A Mehl; E James Petersson
Journal:  J Am Chem Soc       Date:  2013-12-04       Impact factor: 15.419

10.  Lanmodulin peptides - unravelling the binding of the EF-Hand loop sequences stripped from the structural corset.

Authors:  Sophie M Gutenthaler; Satoru Tsushima; Robin Steudtner; Manuel Gailer; Anja Hoffmann-Röder; Björn Drobot; Lena J Daumann
Journal:  Inorg Chem Front       Date:  2022-06-30       Impact factor: 7.779

  10 in total

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