Literature DB >> 6692923

A novel super-secondary structure of proteins and the relation between the structure and the amino acid sequence.

A V Efimov.   

Abstract

A novel protein super-secondary structure which is referred to as an alpha alpha-corner is considered. The alpha alpha-corner is formed by two consecutive alpha-helices packed approximately crosswise and connected by two or more peptide units. It is shown that the amino acid sequences coding for the alpha alpha-corners have a strictly definite order of hydrophobic, hydrophilic and glycine residues. A hypothesis is suggested that the alpha alpha-corner can be an embryo of protein folding.

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Year:  1984        PMID： 6692923     DOI： 10.1016/0014-5793(84)80039-3

Source DB:  PubMed          Journal:  FEBS Lett        ISSN： 0014-5793            Impact factor:   4.124


  11 in total

1.  Structure of a protein-DNA complex essential for DNA protection in spores of Bacillus species.

Authors:  Ki Seog Lee; Daniela Bumbaca; Jeffrey Kosman; Peter Setlow; Mark J Jedrzejas
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

2.  A molecular dynamics study of the C-terminal fragment of the L7/L12 ribosomal protein. II. Effects of intermolecular interactions on structure and dynamics.

Authors:  J Aqvist; M Leijonmarck; O Tapia
Journal:  Eur Biophys J       Date:  1989       Impact factor: 1.733

3.  Super-secondary structure peptidomimetics: design and synthesis of an α-α hairpin analogue.

Authors:  Laura Nevola; Johanna M Rodriguez; Sam Thompson; Andrew D Hamilton
Journal:  Supramol Chem       Date:  2013-09-01       Impact factor: 1.688

4.  Ribosomal protein L7/L12 has a helix-turn-helix motif similar to that found in DNA-binding regulatory proteins.

Authors:  P A Rice; T A Steitz
Journal:  Nucleic Acids Res       Date:  1989-05-25       Impact factor: 16.971

Review 5.  The role of key residues in structure, function, and stability of cytochrome-c.

Authors:  Sobia Zaidi; Md Imtaiyaz Hassan; Asimul Islam; Faizan Ahmad
Journal:  Cell Mol Life Sci       Date:  2013-04-25       Impact factor: 9.261

6.  A structural-alphabet-based strategy for finding structural motifs across protein families.

Authors:  Chih Yuan Wu; Yao Chi Chen; Carmay Lim
Journal:  Nucleic Acids Res       Date:  2010-06-04       Impact factor: 16.971

7.  Early-stage folding in proteins (in silico) sequence-to-structure relation.

Authors:  Michał Brylinski; Leszek Konieczny; Patryk Czerwonko; Wiktor Jurkowski; Irena Roterman
Journal:  J Biomed Biotechnol       Date:  2005-06-30

8.  Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys.

Authors:  Dan M Bolser; Ioannis Filippis; Henning Stehr; Jose Duarte; Michael Lappe
Journal:  BMC Struct Biol       Date:  2008-12-08

9.  Amino acids determining operator binding specificity in the helix-turn-helix motif of Tn10 Tet repressor.

Authors:  A Wissmann; R Baumeister; G Müller; B Hecht; V Helbl; K Pfleiderer; W Hillen
Journal:  EMBO J       Date:  1991-12       Impact factor: 11.598

10.  Limitations of the ABEGO-based backbone design: ambiguity between αα-corner and αα-hairpin.

Authors:  Koya Sakuma
Journal:  Biophys Physicobiol       Date:  2021-05-28
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