Literature DB >> 6660504

A two-dimensional electrophoretic technique for the detection of circular viroids and virusoids.

J Schumacher, J W Randles, D Riesner.   

Abstract

A new gel electrophoretic technique for the rapid and sensitive detection of circular viroids and virusoids is described. Starting from plant material, a typical multisample analysis requires less than 8 h. Viroid concentrations as low as 60 ng/g tissue can be detected unambiguously without the use of radioactivity or highly specialized laboratory equipment. The technique presented here is compared to earlier methods of gel electrophoresis, nucleic acid fingerprinting, and currently employed hybridization techniques. A number of important technical advantages, including speed, simplicity, and sensitivity, suggest that the methods described here may have wide utility in checking the spread of viroid infections.

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Year:  1983        PMID: 6660504     DOI: 10.1016/0003-2697(83)90685-1

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  32 in total

1.  The strands of both polarities of a small circular RNA from carnation self-cleave in vitro through alternative double- and single-hammerhead structures.

Authors:  C Hernández; J A Daròs; S F Elena; A Moya; R Flores
Journal:  Nucleic Acids Res       Date:  1992-12-11       Impact factor: 16.971

2.  Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithm.

Authors:  Qingfa Wu; Ying Wang; Mengji Cao; Vitantonio Pantaleo; Joszef Burgyan; Wan-Xiang Li; Shou-Wei Ding
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-15       Impact factor: 11.205

3.  A new strain of potato spindle tuber viroid (PSTVd-N) exhibits major sequence differences as compared to all other PSTVd strains sequenced so far.

Authors:  H Puchta; T Herold; K Verhoeven; A Roenhorst; K Ramm; W Schmidt-Puchta; H L Sänger
Journal:  Plant Mol Biol       Date:  1990-09       Impact factor: 4.076

4.  Sequence analysis of five new field isolates demonstrates that the chain length of potato spindle tuber viroid (PSTVd) is not strictly conserved but as variable as in other viroids.

Authors:  T Herold; B Haas; R P Singh; A Boucher; H L Sänger
Journal:  Plant Mol Biol       Date:  1992-05       Impact factor: 4.076

5.  Primary and secondary structure of citrus viroid IV (CVd IV), a new chimeric viroid present in dwarfed grapefruit in Israel.

Authors:  H Puchta; K Ramm; R Luckinger; R Hadas; M Bar-Joseph; H L Snger
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

6.  Detection of small RB1 gene deletions in retinoblastoma by multiplex PCR and high-resolution gel electrophoresis.

Authors:  D Lohmann; B Horsthemke; G Gillessen-Kaesbach; F H Stefani; H Höfler
Journal:  Hum Genet       Date:  1992-04       Impact factor: 4.132

7.  A 451-nucleotide circular RNA from cherry with hammerhead ribozymes in its strands of both polarities.

Authors:  F Di Serio; J A Daròs; A Ragozzino; R Flores
Journal:  J Virol       Date:  1997-09       Impact factor: 5.103

8.  The genome of Beet cryptic virus 1 shows high homology to certain cryptoviruses present in phylogenetically distant hosts.

Authors:  Anita Szego; Natalya Enünlü; Sachin D Deshmukh; Dorina Veliceasa; Eva Hunyadi-Gulyás; Thomas Kühne; Pál Ilyés; László Potyondi; Katalin Medzihradszky; Noémi Lukács
Journal:  Virus Genes       Date:  2010-04       Impact factor: 2.332

9.  A viroid from Solanum pseudocapsicum closely related to the tomato apical stunt viroid.

Authors:  R L Spieker; S Marinkovic; H L Sänger
Journal:  Arch Virol       Date:  1996       Impact factor: 2.574

10.  A new sequence variant of Coleus blumei viroid 3 from the Coleus blumei cultivar 'Fairway Ruby'.

Authors:  R L Spieker; S Marinkovic; H L Sänger
Journal:  Arch Virol       Date:  1996       Impact factor: 2.574

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