Literature DB >> 6547863

Conversion from a virtual-bond chain to a complete polypeptide backbone chain.

E O Purisima, H A Scheraga.   

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Year:  1984        PMID： 6547863     DOI： 10.1002/bip.360230706

Source DB:  PubMed          Journal:  Biopolymers        ISSN： 0006-3525            Impact factor:   2.505


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  12 in total

1.  Construction of a full three-dimensional model of the transpeptidase domain of Streptococcus pneumoniae PBP2x starting from its Calpha-atom coordinates.

Authors:  P A van Hooft; H D Höltje
Journal:  J Comput Aided Mol Des       Date:  2000-11       Impact factor: 3.686

2.  Discrete restraint-based protein modeling and the Calpha-trace problem.

Authors:  Mark A DePristo; Paul I W De Bakker; Reshma P Shetty; Tom L Blundell
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

3.  Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.

Authors:  J Lee; A Liwo; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

4.  Building proteins from C alpha coordinates using the dihedral probability grid Monte Carlo method.

Authors:  A M Mathiowetz; W A Goddard
Journal:  Protein Sci       Date:  1995-06       Impact factor: 6.725

5.  De novo prediction of polypeptide conformations using dihedral probability grid Monte Carlo methodology.

Authors:  J S Evans; A M Mathiowetz; S I Chan; W A Goddard
Journal:  Protein Sci       Date:  1995-06       Impact factor: 6.725

6.  Structural elements and organization of the ancestral translational machinery.

Authors:  R Rein; S Srinivasan; J McDonald; G Raghunathan; M Shibata
Journal:  Orig Life Evol Biosph       Date:  1987       Impact factor: 1.950

7.  Computed three-dimensional structures for the ras-binding domain of the raf-p74 protein complexed with ras-p21 and with its suppressor protein, rap-1A.

Authors:  J M Chen; S Manolatos; P W Brandt-Rauf; R B Murphy; R Monaco; M R Pincus
Journal:  J Protein Chem       Date:  1996-08

8.  PRIMO/PRIMONA: a coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy.

Authors:  Srinivasa M Gopal; Shayantani Mukherjee; Yi-Ming Cheng; Michael Feig
Journal:  Proteins       Date:  2010-04

9.  PROGEN: an automated modelling algorithm for the generation of complete protein structures from the alpha-carbon atomic coordinates.

Authors:  C Mandal; D S Linthicum
Journal:  J Comput Aided Mol Des       Date:  1993-04       Impact factor: 3.686

10.  Calculation of protein backbone geometry from alpha-carbon coordinates based on peptide-group dipole alignment.

Authors:  A Liwo; M R Pincus; R J Wawak; S Rackovsky; H A Scheraga
Journal:  Protein Sci       Date:  1993-10       Impact factor: 6.725
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