Literature DB >> 6518264

Molecular mechanical studies of base-pair opening in d(CGCGC):d(GCGCG), dG5 . dC5, d(TATAT):d(ATATA), and dA5 . dT5 in the B and Z forms of DNA.

J Keepers, P A Kollman, T L James.   

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Year:  1984        PMID： 6518264     DOI： 10.1002/bip.360231124

Source DB:  PubMed          Journal:  Biopolymers        ISSN： 0006-3525            Impact factor:   2.505


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  9 in total

1.  Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations.

Authors:  Emmanuel Giudice; Péter Várnai; Richard Lavery
Journal:  Nucleic Acids Res       Date:  2003-03-01       Impact factor: 16.971

2.  1H NMR determination of base-pair lifetimes in oligonucleotides containing single base mismatches.

Authors:  Pratip K Bhattacharya; Julie Cha; Jacqueline K Barton
Journal:  Nucleic Acids Res       Date:  2002-11-01       Impact factor: 16.971

3.  Sequence-dependent base pair opening in DNA double helix.

Authors:  Andrew Krueger; Ekaterina Protozanova; Maxim D Frank-Kamenetskii
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

4.  Structure of the 1,4-Bis(2'-deoxyadenosin-N(6)-yl)-2S,3S-butanediol intrastrand DNA cross-link arising from butadiene diepoxide in the human N-ras codon 61 sequence.

Authors:  Wen Xu; W Keither Merritt; Lubomir V Nechev; Thomas M Harris; Constance M Harris; R Stephen Lloyd; Michael P Stone
Journal:  Chem Res Toxicol       Date:  2007-01-27       Impact factor: 3.739

5.  Energetic coupling between DNA bending and base pair opening.

Authors:  J Ramstein; R Lavery
Journal:  Proc Natl Acad Sci U S A       Date:  1988-10       Impact factor: 11.205

6.  Dual roles of glycosyl torsion angle conformation and stereochemical configuration in butadiene oxide-derived N1 beta-hydroxyalkyl deoxyinosine adducts: a structural perspective.

Authors:  W Keither Merritt; Agnieszka Kowalczyk; Tandace A Scholdberg; Stephen M Dean; Thomas M Harris; Constance M Harris; R Stephen Lloyd; Michael P Stone
Journal:  Chem Res Toxicol       Date:  2005-07       Impact factor: 3.739

7.  An Improved Reaction Coordinate for Nucleic Acid Base Flipping Studies.

Authors:  Kun Song; Arthur J Campbell; Christina Bergonzo; Carlos de Los Santos; Arthur P Grollman; Carlos Simmerling
Journal:  J Chem Theory Comput       Date:  2009-10-09       Impact factor: 6.006

8.  Sequence dependency of canonical base pair opening in the DNA double helix.

Authors:  Viveca Lindahl; Alessandra Villa; Berk Hess
Journal:  PLoS Comput Biol       Date:  2017-04-03       Impact factor: 4.475

9.  Energy Landscapes for Base-Flipping in a Model DNA Duplex.

Authors:  Debayan Chakraborty; David J Wales
Journal:  J Phys Chem B       Date:  2022-04-15       Impact factor: 2.991
  9 in total

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