Literature DB >> 6462911

Fast computer search for similar DNA sequences.

M Bishop, E Thompson.   

Abstract

An extremely fast method of searching a nucleic acid sequence database against a probe sequence is described. The method is based on the detection of deviation from expected number and deviation from random spatial distribution of sub-sequences which are unique within a sequence, and shared between that sequence and the probe. On an IBM 3081 computer, total search of an encoded form of the EMBL nucleic acid sequence database with a 1 kbase probe sequence is completed in a few seconds. Previous best methods for a similar task required a few minutes.

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Year:  1984        PMID： 6462911      PMCID： PMC318933          DOI： 10.1093/nar/12.13.5471

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  4 in total

1.  Efficient algorithms for folding and comparing nucleic acid sequences.

Authors:  J P Dumas; J Ninio
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

2.  An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1982-05-11       Impact factor: 16.971

3.  New approaches for computer analysis of nucleic acid sequences.

Authors:  S Karlin; G Ghandour; F Ost; S Tavare; L J Korn
Journal:  Proc Natl Acad Sci U S A       Date:  1983-09       Impact factor: 11.205

4.  Rapid similarity searches of nucleic acid and protein data banks.

Authors:  W J Wilbur; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205
  4 in total
  4 in total

1.  Heuristic informational analysis of sequences.

Authors:  J M Claverie; L Bougueleret
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

2.  A flexible method to align large numbers of biological sequences.

Authors:  W R Taylor
Journal:  J Mol Evol       Date:  1988 Dec-1989 Feb       Impact factor: 2.395

3.  Overexpression and site-directed mutagenesis of the succinyl-CoA synthetase of Escherichia coli and nucleotide sequence of a gene (g30) that is adjacent to the suc operon.

Authors:  D Buck; J R Guest
Journal:  Biochem J       Date:  1989-06-15       Impact factor: 3.857

4.  Isolation of a human gene with protein sequence similarity to human and murine int-1 and the Drosophila segment polarity mutant wingless.

Authors:  B J Wainwright; P J Scambler; P Stanier; E K Watson; G Bell; C Wicking; X Estivill; M Courtney; A Boue; P S Pedersen
Journal:  EMBO J       Date:  1988-06       Impact factor: 11.598
  4 in total

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