Literature DB >> 6329743

The supercoil-stabilised cruciform of ColE1 is hyper-reactive to osmium tetroxide.

D M Lilley, E Palecek.   

Abstract

Supercoiled pColIR215 contains a site of pronounced hyper-reactivity towards modification by osmium tetroxide, a reagent known to be single-strand-selective. The site of hypersensitivity has been mapped to the ColE1 inverted repeat, believed to extrude a cruciform in supercoiled DNA. Linear or relaxed plasmids are not modified by the reagent. We conclude that cruciform formation is responsible for the site-selective modification. Fine mapping of the modification site as a function of time has revealed that the initial reaction occurs at the centre of the inverted repeat, i.e., the unpaired loop of the cruciform, but that the modification region rapidly expands outwards from this point.

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Year:  1984        PMID: 6329743      PMCID: PMC557493          DOI: 10.1002/j.1460-2075.1984.tb01949.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  29 in total

1.  Polynucleotide kinase exchange reaction: quantitave assay for restriction endonuclease-generated 5'-phosphoroyl termini in DNA.

Authors:  K L Berkner; W R Folk
Journal:  J Biol Chem       Date:  1977-05-25       Impact factor: 5.157

2.  The site of covalent attachment in the crystalline osmium-tRNA-fMet isomorphous derivative.

Authors:  J J Rosa; P B Sigler
Journal:  Biochemistry       Date:  1974-12-03       Impact factor: 3.162

3.  Early and late helix-coil transitions in closed circular DNA. The number of superhelical turns in polyoma DNA.

Authors:  J Vinograd; J Lebowitz; R Watson
Journal:  J Mol Biol       Date:  1968-04-14       Impact factor: 5.469

4.  Theoretical analysis of transitions between B- and Z-conformations in torsionally stressed DNA.

Authors:  C J Benham
Journal:  Nature       Date:  1980-08-07       Impact factor: 49.962

5.  Determination of base sequence in nucleic acids with the electron microscope. V. The thymine-specific reactions of osmium tetroxide with deoxyribonucleic acid and its components.

Authors:  M Beer; S Stern; D Carmalt; K H Mohlhenrich
Journal:  Biochemistry       Date:  1966-07       Impact factor: 3.162

6.  The crystal and molecular structure of an osmium bispyridine adduct of thymine.

Authors:  S Neidle; D I Stuart
Journal:  Biochim Biophys Acta       Date:  1976-01-19

7.  Thermodynamic properties of superhelical DNAs.

Authors:  T S Hsieh; J C Wang
Journal:  Biochemistry       Date:  1975-02-11       Impact factor: 3.162

8.  Osmium-labeled polynucleotides. The reaction of osmium tetroxide with deoxyribonucleic acid and synthetic polynucleotides in the presence of tertiary nitrogen donor ligands.

Authors:  C H Chang; M Beer; L G Marzilli
Journal:  Biochemistry       Date:  1977-01-11       Impact factor: 3.162

9.  Three-dimensional structure of yeast phenylalanine transfer RNA: folding of the polynucleotide chain.

Authors:  S H Kim; G J Quigley; F L Suddath; A McPherson; D Sneden; J J Kim; J Weinzierl; A Rich
Journal:  Science       Date:  1973-01-19       Impact factor: 47.728

10.  Physical and topological properties of circular DNA.

Authors:  J Vinograd; J Lebowitz
Journal:  J Gen Physiol       Date:  1966-07       Impact factor: 4.086

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  30 in total

1.  Superhelical torsion in cellular DNA responds directly to environmental and genetic factors.

Authors:  J A McClellan; P Boublíková; E Palecek; D M Lilley
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

2.  Action of site-specific recombinases XerC and XerD on tethered Holliday junctions.

Authors:  L K Arciszewska; I Grainge; D J Sherratt
Journal:  EMBO J       Date:  1997-06-16       Impact factor: 11.598

3.  The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles).

Authors:  A Bhattacharyya; D M Lilley
Journal:  Nucleic Acids Res       Date:  1989-09-12       Impact factor: 16.971

4.  Rh(DIP)3(3+): a shape-selective metal complex which targets cruciforms.

Authors:  M R Kirshenbaum; R Tribolet; J K Barton
Journal:  Nucleic Acids Res       Date:  1988-08-25       Impact factor: 16.971

5.  Structure- and sequence-specificity of ozone degradation of supercoiled plasmid DNA.

Authors:  K Sawadaishi; K Miura; E Ohtsuka; T Ueda; N Shinriki; K Ishizaki
Journal:  Nucleic Acids Res       Date:  1986-02-11       Impact factor: 16.971

6.  Reactivity of cytosine and thymine in single-base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations.

Authors:  R G Cotton; N R Rodrigues; R D Campbell
Journal:  Proc Natl Acad Sci U S A       Date:  1988-06       Impact factor: 11.205

7.  (A-T)n tracts embedded in random sequence DNA--formation of a structure which is chemically reactive and torsionally deformable.

Authors:  J A McClellan; E Palecek; D M Lilley
Journal:  Nucleic Acids Res       Date:  1986-12-09       Impact factor: 16.971

8.  Similarity between oncogenic v-rel protein and regulatory fnr protein.

Authors:  H R Chen; L S Yeh; W C Barker
Journal:  Nucleic Acids Res       Date:  1986-05-12       Impact factor: 16.971

9.  Formation of (dA-dT)n cruciforms in Escherichia coli cells under different environmental conditions.

Authors:  A Dayn; S Malkhosyan; D Duzhy; V Lyamichev; Y Panchenko; S Mirkin
Journal:  J Bacteriol       Date:  1991-04       Impact factor: 3.490

10.  Parallel-stranded DNA under topological stress: rearrangement of (dA)15.(dT)15 to a d(A.A.T)n triplex.

Authors:  J Klysik; K Rippe; T M Jovin
Journal:  Nucleic Acids Res       Date:  1991-12       Impact factor: 16.971

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