Literature DB >> 6325153

Nucleosome reconstitution on plasmid-inserted poly(dA) . poly(dT).

A Prunell.   

Abstract

Chromatin was reconstituted from core histones and recombinant plasmid DNAs carrying poly(dA) . poly(dT) inserts of various lengths. A 97-bp insert was found to occupy discrete and regularly-spaced positions on the edges of the nucleosome. This insert cannot, however, be entirely included due to a block in the center of the particle. In contrast, nucleosomes reconstitute on a shorter 20-bp insert. In this case, the insert shows a marked preference for the edges of the particle. Possible structural and physiological implications of these observations are discussed.

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Year:  1982        PMID: 6325153      PMCID: PMC553016          DOI: 10.1002/j.1460-2075.1982.tb01143.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  28 in total

1.  Folding of the DNA double helix in chromatin-like structures from simian virus 40.

Authors:  J E Germond; B Hirt; P Oudet; M Gross-Bellark; P Chambon
Journal:  Proc Natl Acad Sci U S A       Date:  1975-05       Impact factor: 11.205

2.  Photographic quantitation of DNA in gel electrophoresis.

Authors:  A Prunell; F Strauss; B Leblanc
Journal:  Anal Biochem       Date:  1977-03       Impact factor: 3.365

3.  Structure of nucleosome core particles of chromatin.

Authors:  J T Finch; L C Lutter; D Rhodes; R S Brown; B Rushton; M Levitt; A Klug
Journal:  Nature       Date:  1977-09-01       Impact factor: 49.962

4.  Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.

Authors:  P W Rigby; M Dieckmann; C Rhodes; P Berg
Journal:  J Mol Biol       Date:  1977-06-15       Impact factor: 5.469

5.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

6.  Promotor region for yeast 5S ribosomal RNA.

Authors:  A M Maxam; R Tizard; K G Skryabin; W Gilbert
Journal:  Nature       Date:  1977-06-16       Impact factor: 49.962

7.  Nucleotide sequence of the yeast 5S ribosomal RNA gene and adjacent putative control regions.

Authors:  P Valenzuela; G I Bell; F R Masiarz; L J DeGennaro; W J Rutter
Journal:  Nature       Date:  1977-06-16       Impact factor: 49.962

8.  The fractionation of high-molecular-weight ribonucleic acid by polyacrylamide-gel electrophoresis.

Authors:  U E Loening
Journal:  Biochem J       Date:  1967-01       Impact factor: 3.857

9.  Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure.

Authors:  R E Dickerson; H R Drew
Journal:  J Mol Biol       Date:  1981-07-15       Impact factor: 5.469

10.  Characterization of polypyrimidines in Drosophila and L-cell DNA.

Authors:  H C Birnboim; N A Straus; R R Sederoff
Journal:  Biochemistry       Date:  1975-04-22       Impact factor: 3.162

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  59 in total

1.  Chromatin structure of the 5' flanking region of the yeast LEU2 gene.

Authors:  J F Martínez-García; F Estruch; J E Pérez-Ortín
Journal:  Mol Gen Genet       Date:  1989-06

2.  Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo.

Authors:  B Suter; G Schnappauf; F Thoma
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

3.  Regulation of the Dictyostelium cAMP-induced, prestalk-specific DdrasD gene: identification of cis-acting elements.

Authors:  R K Esch; P K Howard; R A Firtel
Journal:  Nucleic Acids Res       Date:  1992-03-25       Impact factor: 16.971

Review 4.  Evolutionary consequences of nonrandom damage and repair of chromatin domains.

Authors:  T Boulikas
Journal:  J Mol Evol       Date:  1992-08       Impact factor: 2.395

5.  Exposing the core promoter is sufficient to activate transcription and alter coactivator requirement at RNR3.

Authors:  Hesheng Zhang; Joseph C Reese
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

6.  DNA sequence-directed organization of chromatin: structure-based computational analysis of nucleosome-binding sequences.

Authors:  Sreekala Balasubramanian; Fei Xu; Wilma K Olson
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

7.  Differential cofactor requirements for histone eviction from two nucleosomes at the yeast PHO84 promoter are determined by intrinsic nucleosome stability.

Authors:  Christian J Wippo; Bojana Silic Krstulovic; Franziska Ertel; Sanja Musladin; Dorothea Blaschke; Sabrina Stürzl; Guo-Cheng Yuan; Wolfram Hörz; Philipp Korber; Slobodan Barbaric
Journal:  Mol Cell Biol       Date:  2009-03-23       Impact factor: 4.272

8.  Unique poly(dA).poly(dT) B'-conformation in cellular and synthetic DNAs.

Authors:  S Diekmann; D A Zarling
Journal:  Nucleic Acids Res       Date:  1987-08-11       Impact factor: 16.971

9.  Identification and characterization of multiple A/T-rich cis-acting elements that control expression from Dictyostelium actin promoters: the Dictyostelium actin upstream activating sequence confers growth phase expression and has enhancer-like properties.

Authors:  R Hori; R A Firtel
Journal:  Nucleic Acids Res       Date:  1994-11-25       Impact factor: 16.971

10.  Two nuclear DNA binding proteins of Dictyostelium discoideum with a high affinity for poly(dA)-poly(dT).

Authors:  H Garreau; J G Williams
Journal:  Nucleic Acids Res       Date:  1983-12-10       Impact factor: 16.971

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