Literature DB >> 6300836

Molecular cloning of double-stranded RNA virus genomes.

M Imai, M A Richardson, N Ikegami, A J Shatkin, Y Furuichi.   

Abstract

Genome double-stranded RNAs isolated from purified human reovirus (serotype 3) and rotavirus (Wa strain) were modified at the 3' termini by addition of oligo(C) approximately 15 with T4 RNA ligase. These RNAs were transcribed into cDNA by oligo(dG)-primed reverse transcriptase and cloned after insertion into pBR322 at the Pst I site. Hybridization of plasmid-transformed Escherichia coli RR1 colonies with 32P-labeled viral genome RNAs demonstrated the presence of DNA clones representative of each of the 10 reovirus RNAs and 10 of the 11 constituent segments of the rotavirus genome. Analyses of the size and terminal nucleotide sequences of insert DNAs indicated that some clones contained a full-length copy of the virus genome segment. The complete nucleotide sequence of rotavirus genome segment 11 double-stranded RNA was obtained by using this procedure. It provides a general method for cloning double-stranded RNAs and also nonpolyadenylylated single-stranded RNAs.

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Year:  1983        PMID: 6300836      PMCID: PMC393379          DOI: 10.1073/pnas.80.2.373

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  Methylmercury as a reversible denaturing agent for agarose gel electrophoresis.

Authors:  J M Bailey; N Davidson
Journal:  Anal Biochem       Date:  1976-01       Impact factor: 3.365

2.  Studies of nucleotide sequences in tobacco mosaic virus ribonucleic acid. IV. Use of aniline in stepwise degradation.

Authors:  A Steinschneider; H Fraenkel-Conrat
Journal:  Biochemistry       Date:  1966-08       Impact factor: 3.162

3.  Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose.

Authors:  P S Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  1980-09       Impact factor: 11.205

4.  The sequence 5'-AAUAAA-3'forms parts of the recognition site for polyadenylation of late SV40 mRNAs.

Authors:  M Fitzgerald; T Shenk
Journal:  Cell       Date:  1981-04       Impact factor: 41.582

5.  Colony hybridization.

Authors:  M Grunstein; J Wallis
Journal:  Methods Enzymol       Date:  1979       Impact factor: 1.600

6.  Three double-stranded RNA genome segments of bacteriophage phi 6 have homologous terminal sequences.

Authors:  H Iba; T Watanabe; Y Emori; Y Okada
Journal:  FEBS Lett       Date:  1982-05-03       Impact factor: 4.124

7.  Proteolytic cleavage fo native DNA polymerase into two different catalytic fragments. Influence of assay condtions on the change of exonuclease activity and polymerase activity accompanying cleavage.

Authors:  H Klenow; K Overgaard-Hansen; S A Patkar
Journal:  Eur J Biochem       Date:  1971-10-14

8.  Factors affecting the transformation of Escherichia coli strain chi1776 by pBR322 plasmid DNA.

Authors:  M V Norgard; K Keem; J J Monahan
Journal:  Gene       Date:  1978-07       Impact factor: 3.688

9.  Allosteric stimulatory effect of S-adenosylmethionine on the RNA polymerase in cytoplasmic polyhedrosis virus. A model for the positive control of eukaryotic transcription.

Authors:  Y Furuichi
Journal:  J Biol Chem       Date:  1981-01-10       Impact factor: 5.157

10.  Separation of the plus and minus strands of cytoplasmic polyhedrosis virus and human reovirus double-stranded genome RNAs by gel electrophoresis.

Authors:  R E Smith; M A Morgan; Y Furuichi
Journal:  Nucleic Acids Res       Date:  1981-10-24       Impact factor: 16.971

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  31 in total

1.  Nucleotide sequence analysis of rotavirus gene 11 from two tissue culture-adapted ATCC strains, RRV and Wa.

Authors:  K V Mohan; C D Atreya
Journal:  Virus Genes       Date:  2001-12       Impact factor: 2.332

2.  Cloning of noncultivatable human rotavirus by single primer amplification.

Authors:  P R Lambden; S J Cooke; E O Caul; I N Clarke
Journal:  J Virol       Date:  1992-03       Impact factor: 5.103

3.  Rotavirus RNA replication requires a single-stranded 3' end for efficient minus-strand synthesis.

Authors:  D Chen; J T Patton
Journal:  J Virol       Date:  1998-09       Impact factor: 5.103

4.  Sequence analysis of gene 11 equivalents from "short" and "super short" strains of rotavirus.

Authors:  S M Matsui; E R Mackow; S Matsuno; P S Paul; H B Greenberg
Journal:  J Virol       Date:  1990-01       Impact factor: 5.103

5.  Porcine OSU rotavirus segment II sequence shows common features with the viral gene of human origin.

Authors:  S A González; O R Burrone
Journal:  Nucleic Acids Res       Date:  1989-08-11       Impact factor: 16.971

6.  Rotavirus SA11 genome segment 11 protein is a nonstructural phosphoprotein.

Authors:  S K Welch; S E Crawford; M K Estes
Journal:  J Virol       Date:  1989-09       Impact factor: 5.103

Review 7.  Rotavirus gene structure and function.

Authors:  M K Estes; J Cohen
Journal:  Microbiol Rev       Date:  1989-12

8.  Simian rotavirus SA11 segment 11 contains overlapping reading frames.

Authors:  D B Mitchell; G W Both
Journal:  Nucleic Acids Res       Date:  1988-07-11       Impact factor: 16.971

9.  Diagnosis of rotavirus infection with cloned cDNA copies of viral genome segments.

Authors:  M Lin; M Imai; A R Bellamy; N Ikegami; Y Furuichi; D Summers; D L Nuss; R Deibel
Journal:  J Virol       Date:  1985-08       Impact factor: 5.103

10.  The stiffness of dsRNA: hydrodynamic studies on fluorescence-labelled RNA segments of bovine rotavirus.

Authors:  R Kapahnke; W Rappold; U Desselberger; D Riesner
Journal:  Nucleic Acids Res       Date:  1986-04-25       Impact factor: 16.971

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