Literature DB >> 6289879

Poly(7-deazaguanylic acid), the homopolynucleotide of the parent nucleoside of queuosine.

F Seela, Q H Tran-Thi, D Franzen.   

Abstract

Poly(7-deazaguanylic acid) was enzymatically synthesized by the polymerization of 7-deazaguanosine 5'-diphosphate with polynucleotide phosphorylase from Micrococcus luteus in high yield. The homopolymer showed a similar thermal and total hypochromicity to poly(G) at the long wavelength absorption maximum. No sigmoid melting profile was observed for poly(c7G) as is found for poly(G), implying a single-stranded structure in aqueous solution. From the circular dichroism spectra it can be concluded that the 7-deazapurine nucleotide is much more flexible than the purine nucleotide. In analogy to poly(G), the homopolymer poly(c7G) forms a 1:1 complex with poly(C) under neutral conditions, melting at a similar temperature to the poly(G) complex. However, at pH 2.5, where a poly(G) X 2poly(C) complex is observed, poly(c7G) still binds only one poly(C) strand. This is due to the lack of N-7 in poly(c7G), not allowing Hoogsteen base pair formation, which occurs with poly(G). RNase T1 cleaves poly(c7G), indicating that N-7 of guanosine is not a requirement for nucleotide binding to the enzyme, as has been suggested. Because of the single-stranded structure of poly(c7G), the polynucleotide chain is rapidly hydrolyzed by the single-strand-specific nuclease S1, whereas multistranded poly(G) is completely resistant.

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Year:  1982        PMID: 6289879     DOI: 10.1021/bi00261a024

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

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Authors:  I Kuzmine; P A Gottlieb; C T Martin
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

2.  Minimising the secondary structure of DNA targets by incorporation of a modified deoxynucleoside: implications for nucleic acid analysis by hybridisation.

Authors:  H K Nguyen; E M Southern
Journal:  Nucleic Acids Res       Date:  2000-10-15       Impact factor: 16.971

3.  Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications.

Authors:  Paul F Agris
Journal:  EMBO Rep       Date:  2008-06-13       Impact factor: 8.807

4.  Solid-phase synthesis of the self-complementary hexamer d(c7GpCpc7GpCpc7GpC) via the O-3'-phosphoramidite of 7-deaza-2'-deoxyguanosine.

Authors:  F Seela; H Driller
Journal:  Nucleic Acids Res       Date:  1985-02-11       Impact factor: 16.971

5.  Structure and expression of the herpes simplex virus type 2 glycoprotein gB gene.

Authors:  L L Stuve; S Brown-Shimer; C Pachl; R Najarian; D Dina; R L Burke
Journal:  J Virol       Date:  1987-02       Impact factor: 5.103

6.  Tightening of active site interactions en route to the transition state revealed by single-atom substitution in the guanosine-binding site of the Tetrahymena group I ribozyme.

Authors:  Marcello Forconi; Rishi H Porecha; Joseph A Piccirilli; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2011-05-03       Impact factor: 15.419

7.  Elimination of band compression in sequencing gels by the use of N4-methyl-2'-deoxycytidine 5'-triphosphate.

Authors:  S Li; A Haces; L Stupar; G Gebeyehu; R C Pless
Journal:  Nucleic Acids Res       Date:  1993-06-11       Impact factor: 16.971

8.  Poly(2-methylthio-7-deazainosinic acid)--hydrophobic stabilization of polynucleotide secondary structure by the 2-methylthio group.

Authors:  F Seela; J Ott; D Franzen
Journal:  Nucleic Acids Res       Date:  1983-09-10       Impact factor: 16.971

9.  Polymerase chain reaction analysis of fragile X mutations.

Authors:  S H Erster; W T Brown; P Goonewardena; C S Dobkin; E C Jenkins; R G Pergolizzi
Journal:  Hum Genet       Date:  1992 Sep-Oct       Impact factor: 4.132

10.  7-Deazapurine containing DNA: efficiency of c7GdTP, c7AdTP and c7IdTP incorporation during PCR-amplification and protection from endodeoxyribonuclease hydrolysis.

Authors:  F Seela; A Röling
Journal:  Nucleic Acids Res       Date:  1992-01-11       Impact factor: 16.971

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