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Literature DB >> 6278404

Computer programs for the analysis and the management of DNA sequences.

Abstract

A program package is described for the management and the analysis of DNA sequence data. The programs - with the exception of a few Fortran routines - are written in the programming language APL. They are best used interactively although batch processing is possible. The package has been in constant use for about 3 years and contains programs for most of the routine problems presently found in a DNA sequencing laboratory.

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Substances：

Year: 1982 PMID： 6278404 PMCID： PMC326127 DOI： 10.1093/nar/10.1.207

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

6 in total

1. Matching sequences under deletion-insertion constraints.

Authors: D Sankoff
Journal: Proc Natl Acad Sci U S A Date: 1972-01 Impact factor: 11.205

2. Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification.

Authors: J C Shepherd
Journal: Proc Natl Acad Sci U S A Date: 1981-03 Impact factor: 11.205

3. Sequence of a ribosomal RNA gene intron from Tetrahymena.

Authors: M A Wild; R Sommer
Journal: Nature Date: 1980-02-14 Impact factor: 49.962

4. Identification of common molecular subsequences.

Authors: T F Smith; M S Waterman
Journal: J Mol Biol Date: 1981-03-25 Impact factor: 5.469

5. Nucleotide sequence of bacteriophage fd DNA.

Authors: E Beck; R Sommer; E A Auerswald; C Kurz; B Zink; G Osterburg; H Schaller; K Sugimoto; H Sugisaki; T Okamoto; M Takanami
Journal: Nucleic Acids Res Date: 1978-12 Impact factor: 16.971

6. Nucleotide sequence and corresponding amino acid sequence of the gene for the major antigen of foot and mouth disease virus.

Authors: C Kurz; S Forss; H Küpper; K Strohmaier; H Schaller
Journal: Nucleic Acids Res Date: 1981-04-24 Impact factor: 16.971

6 in total

10 in total

8. Complete sequence of a bovine type I cytokeratin gene: conserved and variable intron positions in genes of polypeptides of the same cytokeratin subfamily.

Authors: M Rieger; J L Jorcano; W W Franke
Journal: EMBO J Date: 1985-09 Impact factor: 11.598

9. Amino acid sequence of the carboxy-terminal part of an acidic type I cytokeratin of molecular weight 51 000 from Xenopus laevis epidermis as predicted from the cDNA sequence.

Authors: W Hoffmann; J K Franz
Journal: EMBO J Date: 1984-06 Impact factor: 11.598

10. The molecular basis of the antigenic variation of foot-and-mouth disease virus.

Authors: E Beck; G Feil; K Strohmaier
Journal: EMBO J Date: 1983 Impact factor: 11.598

10 in total

Computer programs for the analysis and the management of DNA sequences.

1. Matching sequences under deletion-insertion constraints.

2. Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification.

3. Sequence of a ribosomal RNA gene intron from Tetrahymena.

4. Identification of common molecular subsequences.

5. Nucleotide sequence of bacteriophage fd DNA.

6. Nucleotide sequence and corresponding amino acid sequence of the gene for the major antigen of foot and mouth disease virus.

1. Nonepidermal members of the keratin multigene family: cDNA sequences and in situ localization of the mRNAs.

2. Subtyping of European foot-and-mouth disease virus strains by nucleotide sequence determination.

3. A peptide to DNA conversion program.

4. Cross-reaction of snRNA and an Alu I-like sequence from rat with DNAs from different eucaryotic species.

5. Nucleotide sequence and genome organization of foot-and-mouth disease virus.

6. A tandem repeat gene in a picornavirus.

7. Structure of the FMDV translation initiation site and of the structural proteins.

8. Complete sequence of a bovine type I cytokeratin gene: conserved and variable intron positions in genes of polypeptides of the same cytokeratin subfamily.

9. Amino acid sequence of the carboxy-terminal part of an acidic type I cytokeratin of molecular weight 51 000 from Xenopus laevis epidermis as predicted from the cDNA sequence.

10. The molecular basis of the antigenic variation of foot-and-mouth disease virus.