Literature DB >> 6265917

Orientation of histidine residues in RNase A: neutron diffraction study.

A Wlodawer, L Sjölin.   

Abstract

Difference Fourier maps have been calculated at 2.8-A resolution by using neutron diffraction data obtained from a single crystal of RNase A. The phases were derived from a model resulting from the joint refinement of x-ray and neutron data at 2.0-A and 2.8-A resolution, respectively. The orientation of histidine-48 assumed during the refinement of the x-ray model at 2.5 A was confirmed, whereas the other three histidines had to be rotated around C beta--C gamma bonds in order to agree with the neutron difference Fourier maps. In the final model, histidine-12 is clearly hydrogen bonded to the carbonyl oxygen of threonine-45 and to the oxygen of the inorganic phosphate, and histidine-119 is bonded to another oxygen of the phosphate and to the oxygen OD1 of aspartic acid-121.

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Year:  1981        PMID: 6265917      PMCID: PMC319456          DOI: 10.1073/pnas.78.5.2853

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  7 in total

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Authors:  G Kartha; J Bello; D Harker
Journal:  Nature       Date:  1967-03-04       Impact factor: 49.962

2.  X-ray analysis of bovine pancreatic ribonuclease analogs: a difference Fourier at 2.8 A resolution of (Orn10)-ribonuclease S'.

Authors:  G Valle; G Zanotti; B Filippi; A del Pra
Journal:  Biopolymers       Date:  1977-06       Impact factor: 2.505

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Authors:  C H Carlisle; R A Palmer; S K Mazumdar; B A Gorinsky; D G Yeates
Journal:  J Mol Biol       Date:  1974-05-05       Impact factor: 5.469

4.  The three-dimensional structure of ribonuclease-S. Interpretation of an electron density map at a nominal resolution of 2 A.

Authors:  H W Wyckoff; D Tsernoglou; A W Hanson; J R Knox; B Lee; F M Richards
Journal:  J Biol Chem       Date:  1970-01-25       Impact factor: 5.157

5.  Studies on the binding of adenylyl-3', 5'-cytidine to ribonuclease.

Authors:  Y Mitsui; Y Urata; K Torii; M Irie
Journal:  Biochim Biophys Acta       Date:  1978-08-21

6.  The structure of cytidilyl(2',5')adenosine when bound to pancreatic ribonuclease S.

Authors:  S Y Wodak
Journal:  J Mol Biol       Date:  1977-11       Impact factor: 5.469

7.  Neutron diffraction identifies His 57 as the catalytic base in trypsin.

Authors:  A A Kossiakoff; S A Spencer
Journal:  Nature       Date:  1980-11-27       Impact factor: 49.962

  7 in total
  7 in total

1.  Preliminary time-of-flight neutron diffraction study on diisopropyl fluorophosphatase (DFPase) from Loligo vulgaris.

Authors:  Marc-Michael Blum; Alexander Koglin; Heinz Rüterjans; Benno Schoenborn; Paul Langan; Julian C-H Chen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-12-22

2.  Hydrogen exchange in RNase A: neutron diffraction study.

Authors:  A Wlodawer; L Sjölin
Journal:  Proc Natl Acad Sci U S A       Date:  1982-03       Impact factor: 11.205

3.  Active site of RNase: neutron diffraction study of a complex with uridine vanadate, a transition-state analog.

Authors:  A Wlodawer; M Miller; L Sjölin
Journal:  Proc Natl Acad Sci U S A       Date:  1983-06       Impact factor: 11.205

4.  Histidine pKa shifts accompanying the inactivating Asp121----Asn substitution in a semisynthetic bovine pancreatic ribonuclease.

Authors:  M T Cederholm; J A Stuckey; M S Doscher; L Lee
Journal:  Proc Natl Acad Sci U S A       Date:  1991-09-15       Impact factor: 11.205

5.  Structural investigation of catalytically modified F120L and F120Y semisynthetic ribonucleases.

Authors:  V S deMel; M S Doscher; M A Glinn; P D Martin; M L Ram; B F Edwards
Journal:  Protein Sci       Date:  1994-01       Impact factor: 6.725

6.  Inhibitor binding influences the protonation states of histidines in SARS-CoV-2 main protease.

Authors:  Anna Pavlova; Diane L Lynch; Isabella Daidone; Laura Zanetti-Polzi; Micholas Dean Smith; Chris Chipot; Daniel W Kneller; Andrey Kovalevsky; Leighton Coates; Andrei A Golosov; Callum J Dickson; Camilo Velez-Vega; José S Duca; Josh V Vermaas; Yui Tik Pang; Atanu Acharya; Jerry M Parks; Jeremy C Smith; James C Gumbart
Journal:  Chem Sci       Date:  2020-11-26       Impact factor: 9.825

7.  Macromolecular Crystallography and Structural Biology Databases at NIST.

Authors:  G L Gilliland
Journal:  J Res Natl Inst Stand Technol       Date:  2001-12-01
  7 in total

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