Literature DB >> 6233536

1H-NMR study of the lambda operator site OL1: assignment of the imino and adenine H2 resonances.

M A Weiss, D J Patel, R T Sauer, M Karplus.   

Abstract

One- and two-dimensional proton NMR methods are being used to study the synthetic lambda operator site O-L1, a 17 base-pair DNA duplex recognized by lambda repressor and Cro protein. The complete assignment of the 17 imino protons, which participate in Watson-Crick hydrogen bonding, and of the eight adenine H2 protons, which lie in the minor groove of the double helix, is presented.

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Year:  1984        PMID： 6233536      PMCID： PMC318809          DOI： 10.1093/nar/12.9.4035

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  18 in total

1.  Helix formation by dAT oligomers. I. Hairpin and straight-chain helices.

Authors:  I E Scheffler; E L Elson; R L Baldwin
Journal:  J Mol Biol       Date:  1968-09-28       Impact factor: 5.469

2.  Imino proton assignments in the proton nuclear magnetic resonance spectrum of the lambda phage OR3 deoxyribonucleic acid fragment.

Authors:  E L Ulrich; E M John; G R Gough; M J Brunden; P T Gilham; W M Westler; J L Markley
Journal:  Biochemistry       Date:  1983-09-13       Impact factor: 3.162

3.  Sequence-dependent variation in the conformation of DNA.

Authors:  G P Lomonossoff; P J Butler; A Klug
Journal:  J Mol Biol       Date:  1981-07-15       Impact factor: 5.469

4.  Nuclear Overhauser effect study and assignment of D stem and reverse-Hoogsteen base pair proton resonances in yeast tRNAAsp.

Authors:  S Roy; A G Redfield
Journal:  Nucleic Acids Res       Date:  1981-12-21       Impact factor: 16.971

5.  Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure.

Authors:  R E Dickerson; H R Drew
Journal:  J Mol Biol       Date:  1981-07-15       Impact factor: 5.469

6.  DNA conformation, dynamics, and interactions in solution.

Authors:  D J Patel; A Pardi; K Itakura
Journal:  Science       Date:  1982-05-07       Impact factor: 47.728

7.  Structure of the DNA-binding region of lac repressor inferred from its homology with cro repressor.

Authors:  B W Matthews; D H Ohlendorf; W F Anderson; Y Takeda
Journal:  Proc Natl Acad Sci U S A       Date:  1982-03       Impact factor: 11.205

8.  Premelting and melting transitions in the d(CGCGAATTCGCG) self-complementary duplex in solution.

Authors:  D J Patel; S A Kozlowski; L A Marky; C Broka; J A Rice; K Itakura; K J Breslauer
Journal:  Biochemistry       Date:  1982-02-02       Impact factor: 3.162

Review 9.  lambda Repressor and cro--components of an efficient molecular switch.

Authors:  A D Johnson; A R Poteete; G Lauer; R T Sauer; G K Ackers; M Ptashne
Journal:  Nature       Date:  1981-11-19       Impact factor: 49.962

10.  Structure of the cro repressor from bacteriophage lambda and its interaction with DNA.

Authors:  W F Anderson; D H Ohlendorf; Y Takeda; B W Matthews
Journal:  Nature       Date:  1981-04-30       Impact factor: 49.962
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  6 in total

1.  Two-dimensional NMR investigation of a bent DNA fragment: assignment of the proton resonances and preliminary structure analysis.

Authors:  A Kintanar; R E Klevit; B R Reid
Journal:  Nucleic Acids Res       Date:  1987-07-24       Impact factor: 16.971

2.  One- and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract.

Authors:  M Katahira; H Sugeta; Y Kyogoku; S Fujii; R Fujisawa; K Tomita
Journal:  Nucleic Acids Res       Date:  1988-09-12       Impact factor: 16.971

3.  Evolutionarily conserved elements in the 5' untranslated region of beta globin mRNA mediate site-specific priming of a unique hairpin structure during cDNA synthesis.

Authors:  V Z Volloch; B Schweitzer; S Rits
Journal:  Nucleic Acids Res       Date:  1994-12-11       Impact factor: 16.971

4.  1H NMR study of the interaction of bacteriophage lambda Cro protein with the OR3 operator. II. Assignment of the non-exchangeable proton resonances of the OR3 operator.

Authors:  K D Hahn; F Buck; H Rüterjans; B K Chernov; K G Skryabin; M P Kirpichnikov
Journal:  Eur Biophys J       Date:  1985       Impact factor: 1.733

5.  Structural characterization of a 2:1 distamycin A.d(CGCAAATTGGC) complex by two-dimensional NMR.

Authors:  J G Pelton; D E Wemmer
Journal:  Proc Natl Acad Sci U S A       Date:  1989-08       Impact factor: 11.205

6.  OR3 operator of bacteriophage lambda in a 23 base-pair DNA fragment: sequence-specific 1H NMR assignments for the non-labile protons and comparison with the isolated 17 base-pair operator.

Authors:  R Grütter; G Otting; K Wüthrich; W Leupin
Journal:  Eur Biophys J       Date:  1988       Impact factor: 1.733
  6 in total

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