Literature DB >> 6201825

Comparative structural analysis of eubacterial 5S rRNA by oxidation of adenines in the N-1 position.

T Pieler, A Schreiber, V A Erdmann.   

Abstract

Adenines in free 5S rRNA from Escherichia coli, Bacillus stearothermophilus and Thermus thermophilus have been oxidized at their N-1 position using monoperphthalic acid. The determination of the number of adenine 1-N-oxides was on the basis of UV spectroscopic data of the intact molecule. Identification of the most readily accessible nucleotides by sequencing gel analysis reveals that they are located in conserved positions within loops, exposed hairpin loops and single-base bulge loops. Implications for the structure and function of 5S rRNA will be discussed on the basis of this comparative analysis.

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Year:  1984        PMID: 6201825      PMCID: PMC318733          DOI: 10.1093/nar/12.7.3115

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

1.  Structure and function of 5S RNA: the role of the 3' terminus in 5S RNA function.

Authors:  V A Erdmann; H G Doberer
Journal:  Mol Gen Genet       Date:  1972

2.  Amount of adenine and uracil base pairs in E. coli 23S, 16S and 5S ribosomal RNA.

Authors:  F Cramer; V A Erdmann
Journal:  Nature       Date:  1968-04-06       Impact factor: 49.962

3.  A proton-coupled conformational switch of Escherichia coli 5S ribosomal RNA.

Authors:  T H Kao; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1980-06       Impact factor: 11.205

4.  A unique secondary folding pattern for 5S RNA corresponds to the lowest energy homologous secondary structure in 17 different prokaryotes.

Authors:  G M Studnicka; F A Eiserling; J A Lake
Journal:  Nucleic Acids Res       Date:  1981-04-24       Impact factor: 16.971

5.  A slow tritium exchange study of the solution structure of Escherichia coli 5 S ribosomal RNA.

Authors:  N M Farber; C R Cantor
Journal:  J Mol Biol       Date:  1981-02-25       Impact factor: 5.469

6.  5S RNA secondary structure.

Authors:  G E Fox; C R Woese
Journal:  Nature       Date:  1975-08-07       Impact factor: 49.962

7.  A characterization of the low temperature structural transition of Escherichia coli 5 S RNA by partial enzymatic digestion.

Authors:  D Rabin; T Kao; D M Crothers
Journal:  J Biol Chem       Date:  1983-09-25       Impact factor: 5.157

8.  Structural analysis of the A and B conformers of Escherichia coli 5 S ribosomal RNA by infrared spectroscopy.

Authors:  S Böhm; H Fabian; S V Matveev; H Lucius; H Welfle; V V Filimonov
Journal:  FEBS Lett       Date:  1981-09-28       Impact factor: 4.124

9.  Secondary structure of eukaryotic cytoplasmic 5S ribosomal RNA.

Authors:  K R Luehrsen; G E Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1981-04       Impact factor: 11.205

10.  Mapping adenines, guanines, and pyrimidines in RNA.

Authors:  H Donis-Keller; A M Maxam; W Gilbert
Journal:  Nucleic Acids Res       Date:  1977-08       Impact factor: 16.971

View more
  5 in total

Review 1.  Eukaryotic 5S rRNA biogenesis.

Authors:  Martin Ciganda; Noreen Williams
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-02-25       Impact factor: 9.957

2.  Nuclease S1 analysis of eubacterial 5S rRNA secondary structure.

Authors:  M T MacDonell; R R Colwell
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

3.  Analysis of the RNA structural elements involved in the binding of the transcription factor III A from Xenopus laevis.

Authors:  T Pieler; U Guddat; S L Oei; V A Erdmann
Journal:  Nucleic Acids Res       Date:  1986-08-11       Impact factor: 16.971

Review 4.  Structure and function of ribosomal RNA.

Authors:  R Brimacombe; W Stiege
Journal:  Biochem J       Date:  1985-07-01       Impact factor: 3.857

5.  Use of specific chemical reagents for detection of modified nucleotides in RNA.

Authors:  Isabelle Behm-Ansmant; Mark Helm; Yuri Motorin
Journal:  J Nucleic Acids       Date:  2011-04-13
  5 in total

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