Literature DB >> 6176270

Dependence of 4'-(hydroxymethyl)-4,5',8-trimethylpsoralen photoaddition on the conformation of ribonucleic acid.

J F Thompson, J P Bachellerie, K Hall, J E Hearst.   

Abstract

The photoaddition of 4'-(hydroxymethyl)-4,5',8-trimethylpsoralen (HMT) to different conformational states of RNA was studied. Poly(U), poly(A,U) (random copolymer), poly(A-U) (alternating copolymer), poly(A) . poly(U) (double stranded), and poly(U) . poly(A) . poly(U) (triple stranded) were reacted with HMT at different temperatures and salt concentrations. The conformation of the polymers was monitored by UV absorption and circular dichroism. It was found that the rate of HMT photoaddition changed dramatically at structural transitions in the RNA. The alternating copolymer poly(A-U) was found to have the highest rate of addition. Low salt and temperature produced maximal incorporation.

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Year:  1982        PMID: 6176270     DOI: 10.1021/bi00535a040

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

1.  Antibody-nucleic acid interactions. Antibodies to psoralen-modified RNA as probes of RNA structure.

Authors:  D J Hurt; K D Winestock; M L O'Connor; M I Johnston
Journal:  Nucleic Acids Res       Date:  1987-11-11       Impact factor: 16.971

2.  Interaction of psoralen-derivatized oligodeoxyribonucleoside methylphosphonates with synthetic DNA containing a promoter for T7 RNA polymerase.

Authors:  B L Lee; K R Blake; P S Miller
Journal:  Nucleic Acids Res       Date:  1988-11-25       Impact factor: 16.971

3.  Rapid characterization of cross-links, mono-adducts, and non-covalent binding of psoralens to deoxyoligonucleotides by LC-UV/ESI-MS and IRMPD mass spectrometry.

Authors:  Suncerae I Smith; Jennifer S Brodbelt
Journal:  Analyst       Date:  2010-02-12       Impact factor: 4.616

4.  Mapping of psoralen cross-linked nucleotides in RNA.

Authors:  E Garrett-Wheeler; R E Lockard; A Kumar
Journal:  Nucleic Acids Res       Date:  1984-04-11       Impact factor: 16.971

5.  Characterization of the effects on ovalbumin mRNA of aminomethyl-trimethylpsoralen photoreaction with hen oviduct mRNA.

Authors:  C D Liarakos; G Reinhart; R A Kopper; R P Maddox
Journal:  Nucleic Acids Res       Date:  1987-10-26       Impact factor: 16.971

6.  Determination of secondary structure in the initiation region of ovalbumin mRNA.

Authors:  C D Liarakos; R P Maddox; K A Hilscher; J R Bishop; D K McGuire; R A Kopper
Journal:  Nucleic Acids Res       Date:  1988-12-09       Impact factor: 16.971

7.  Viral miRNA adaptor differentially recruits miRNAs to target mRNAs through alternative base-pairing.

Authors:  Carlos Gorbea; Tim Mosbruger; David A Nix; Demián Cazalla
Journal:  Elife       Date:  2019-09-20       Impact factor: 8.140

8.  An RNA tagging approach for system-wide RNA-binding proteome profiling and dynamics investigation upon transcription inhibition.

Authors:  Zheng Zhang; Tong Liu; Hangyan Dong; Jian Li; Haofan Sun; Xiaohong Qian; Weijie Qin
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

  8 in total

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