Literature DB >> 6169486

Computer support of DNA sequence analysis.

G Osterburg, R Sommer.   

Abstract

The paper describes a package of APL-programs suited for the management and the analysis of DNA sequence data. Most of the application programs are related to experimental work in a DNA sequencing laboratory: Search for overlapping DNA fragments to construct complete DNA sequences; search for restriction sites; computing fragment patterns when cutting a DNA with restriction enzymes; plotting physical and genetic maps of a DNA; search for homologies as well as various counting procedures. More sophisticated programs are concerned with the prediction of RNA secondary structure and its graphical representation.

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Year:  1981        PMID: 6169486     DOI: 10.1016/0010-468x(81)90088-x

Source DB:  PubMed          Journal:  Comput Programs Biomed        ISSN: 0010-468X


  7 in total

1.  Antiviral drug resistance mutations in human immunodeficiency virus type 1 reverse transcriptase occur in specific RNA structural regions.

Authors:  R F Schinazi; R M Lloyd; C S Ramanathan; E W Taylor
Journal:  Antimicrob Agents Chemother       Date:  1994-02       Impact factor: 5.191

2.  Functional analysis of the core human immunodeficiency virus type 1 packaging signal in a permissive cell line.

Authors:  G P Harrison; G Miele; E Hunter; A M Lever
Journal:  J Virol       Date:  1998-07       Impact factor: 5.103

3.  Secondary structure model of the Mason-Pfizer monkey virus 5' leader sequence: identification of a structural motif common to a variety of retroviruses.

Authors:  G P Harrison; E Hunter; A M Lever
Journal:  J Virol       Date:  1995-04       Impact factor: 5.103

4.  Nucleotide sequence of the bacteriophage T4 gene 57 and a deduced amino acid sequence.

Authors:  R Herrmann
Journal:  Nucleic Acids Res       Date:  1982-02-11       Impact factor: 16.971

5.  Sequences involved in the dimerisation of human T cell leukaemia virus type-1 RNA.

Authors:  J S Greatorex; V Laisse; M C Dockhelar; A M Lever
Journal:  Nucleic Acids Res       Date:  1996-08-01       Impact factor: 16.971

6.  Comparative genomics of foot-and-mouth disease virus.

Authors:  C Carrillo; E R Tulman; G Delhon; Z Lu; A Carreno; A Vagnozzi; G F Kutish; D L Rock
Journal:  J Virol       Date:  2005-05       Impact factor: 5.103

7.  Identification of factor IX mutations in haemophilia B: application of polymerase chain reaction and single strand conformation analysis.

Authors:  B M Fraser; M C Poon; D I Hoar
Journal:  Hum Genet       Date:  1992-02       Impact factor: 4.132

  7 in total

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