Literature DB >> 6163631

Systematic application of two-dimensional 1H nuclear-magnetic-resonance techniques for studies of proteins. 2. Combined use of correlated spectroscopy and nuclear Overhauser spectroscopy for sequential assignments of backbone resonances and elucidation of polypeptide secondary structures.

G Wagner, A Kumar, K Wüthrich.   

Abstract

This paper describes a new nuclear magnetic resonance approach for the determination of secondary structure in globular proteins. To illustrate the practical application of the new procedure, two-dimensional correlated spectroscopy and two-dimensional nuclear Overhauser enhancement spectroscopy were used to obtain individual assignments for all the backbone protons of the beta-sheet secondary structures in the basic pancreatic trypsin inhibitor. First, combined connectivity diagrams of these two methods recorded in both 2H2O solution and H2O solution of the inhibitor were employed to obtain sequential, individual resonance assignments for the separate strands in the beta sheet. Second, a 2D nuclear Overhauser enhancement spectrum recorded with a long mixing time was used to determine how the separate, extended polypeptide strands are linked by hydrogen bonds in the sheet structures. By combination of these results with the identifications of the amino acid side-chain resonances described in the preceding paper, the beta-sheet structures can, without reference to data on the spatial structure obtained with other techniques, be localized in the amino acid sequence. This investigation confirms results on limited regions of the beta sheet in the inhibitor obtained previously with one-dimensional nuclear magnetic resonance experiments and demonstrates that the entire beta-sheet structure seen in single crystals of the inhibitor is preserved in aqueous solution.

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Year:  1981        PMID: 6163631     DOI: 10.1111/j.1432-1033.1981.tb05157.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  9 in total

Review 1.  Proton magnetic resonance spectroscopy of the central, transition and peripheral zones of the prostate: assignments and correlation with histopathology.

Authors:  Peter Swindle; Saadallah Ramadan; Peter Stanwell; Simon McCredie; Peter Russell; Carolyn Mountford
Journal:  MAGMA       Date:  2008-09-17       Impact factor: 2.310

2.  Evidence for helical structure in a tetramer of α2-8 sialic acid: unveiling a structural antigen.

Authors:  Marcos D Battistel; Michael Shangold; Loc Trinh; Joseph Shiloach; Darón I Freedberg
Journal:  J Am Chem Soc       Date:  2012-06-22       Impact factor: 15.419

3.  An investigation into the solution structure of the single-stranded DNA undecamer 5'd AAGTGTGATAT by means of nuclear Overhauser enhancement measurements.

Authors:  G M Clore; A M Gronenborn
Journal:  Eur Biophys J       Date:  1984       Impact factor: 1.733

4.  [Dynamics of protein structures].

Authors:  G Wagner; K Wüthrich
Journal:  Naturwissenschaften       Date:  1983-03

5.  Sequence-specific 1H-NMR assignments and identification of two small antiparallel beta-sheets in the solution structure of recombinant human transforming growth factor alpha.

Authors:  G T Montelione; M E Winkler; L E Burton; E Rinderknecht; M B Sporn; G Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  1989-03       Impact factor: 11.205

6.  Sequence-dependent structural variations in two right-handed alternating pyrimidine-purine DNA oligomers in solution determined by nuclear Overhauser enhancement measurements.

Authors:  G M Clore; A M Gronenborn
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

7.  The solution structure of a B-DNA undecamer comprising a portion of the specific target site for the cAMP receptor protein in the gal operon. Refinement on the basis of interproton distance data.

Authors:  G M Clore; A M Gronenborn
Journal:  EMBO J       Date:  1985-03       Impact factor: 11.598

8.  Mutational and secondary structural analysis of the basolateral sorting signal of the polymeric immunoglobulin receptor.

Authors:  B Aroeti; P A Kosen; I D Kuntz; F E Cohen; K E Mostov
Journal:  J Cell Biol       Date:  1993-12       Impact factor: 10.539

9.  NMR analysis of the structure and metal sequestering properties of metallothioneins.

Authors:  C T Hunt; Y Boulanger; S W Fesik; I M Armitage
Journal:  Environ Health Perspect       Date:  1984-03       Impact factor: 9.031

  9 in total

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