Literature DB >> 6160459

An experimentally-derived model for the secondary structure of the 16S ribosomal RNA from Escherichia coli.

C Glotz, R Brimacombe.   

Abstract

Ribonucleoprotein fragments are isolated by mild ribonuclease digestion of E. coli 30S ribosomal subunits, and are deproteinized and subjected to a second partial digestion. Base-pairing between the resulting small RNA fragments is investigated using the two-dimensional gel electrophoresis procedure already reported (see Ref. 1). The interactions thus found are incorporated into a secondary structure model covering approximately 80% of the 16S RNA.

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Year:  1980        PMID： 6160459      PMCID： PMC324088          DOI： 10.1093/nar/8.11.2377

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  23 in total

1.  Micro thin-layer techniques for rapid sequence analysis of 32P-labeled RNA: double digestion and pancreatic ribonuclease analyses.

Authors:  G Volckaert; W Fiers
Journal:  Anal Biochem       Date:  1977-11       Impact factor: 3.365

2.  Studies on the environment of protein S7 within the 30-S subunit Escherichia coli ribosomes.

Authors:  J Rinke; A Yuki; R Brimacombe
Journal:  Eur J Biochem       Date:  1976-04-15

3.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

4.  The use of ribonuclease U2 in RNA sequence determination. Some corrections in the catalog of oligomers produced by ribonuclease T1 digestion of Escherichia coli 16S ribosomal RNA.

Authors:  T Uchida; L Bonen; H W Schaup; B J Lewis; L Zablen; C Woese
Journal:  J Mol Evol       Date:  1974-02-28       Impact factor: 2.395

5.  A series of specific ribonucleoprotein fragments from the 30-S subparticle of Escherichia coli ribosomes.

Authors:  J Morgan; R Brimacombe
Journal:  Eur J Biochem       Date:  1972-09-25

6.  How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli.

Authors:  J A Steitz; K Jakes
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

7.  Nucleotide sequences of Escherichia coli 16-S RNA associated with ribosomal proteins S7, S9, S10, S14 and S19.

Authors:  A Yuki; R Brimacombe
Journal:  Eur J Biochem       Date:  1975-08-01

8.  Protection of specific sites in 16 S RNA from chemical modification by association of 30 S and 50 S ribosomes.

Authors:  N M Chapman; H F Noller
Journal:  J Mol Biol       Date:  1977-01-05       Impact factor: 5.469

9.  Characterisation of RNA fragments obtained by mild nuclease digestion of 30-S ribosomal subunits from Escherichia coli.

Authors:  J Rinke; A Ross; R Brimacombe
Journal:  Eur J Biochem       Date:  1977-06-01

10.  Conformational analysis of RNA molecules by partial RNAse digestion and two dimensional acrylamide gel electrophoresis. Application to E. coli 5S RNA.

Authors:  R Vigne; B R Jordan
Journal:  Biochimie       Date:  1971       Impact factor: 4.079
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  32 in total

1.  Genetic evidence against the 16S ribosomal RNA helix 27 conformational switch model.

Authors:  Daniel Rodriguez-Correa; Albert E Dahlberg
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

2.  Estimating substitution rates in ribosomal RNA genes.

Authors:  A Rzhetsky
Journal:  Genetics       Date:  1995-10       Impact factor: 4.562

3.  Alternative conformations in Escherichia coli 16S ribosomal RNA.

Authors:  B K Klein; A Staden; D Schlessinger
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

Review 4.  Structure and function of ribosomal RNA.

Authors:  R Brimacombe; W Stiege
Journal:  Biochem J       Date:  1985-07-01       Impact factor: 3.857

5.  Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors:  M Zuker; P Stiegler
Journal:  Nucleic Acids Res       Date:  1981-01-10       Impact factor: 16.971

6.  Functional conservation near the 3' end of eukaryotic small subunit RNA: photochemical crosslinking of P site-bound acetylvalyl-tRNA to 18S RNA of yeast ribosomes.

Authors:  J Ofengand; P Gornicki; K Chakraburtty; K Nurse
Journal:  Proc Natl Acad Sci U S A       Date:  1982-05       Impact factor: 11.205

7.  Xenopus laevis 18S ribosomal RNA: experimental determination of secondary structural elements, and locations of methyl groups in the secondary structure model.

Authors:  J Atmadja; R Brimacombe; B E Maden
Journal:  Nucleic Acids Res       Date:  1984-03-26       Impact factor: 16.971

8.  Localisation of a series of intra-RNA cross-links in 16S RNA, induced by ultraviolet irradiation of Escherichia coli 30S ribosomal subunits.

Authors:  C Zwieb; R Brimacombe
Journal:  Nucleic Acids Res       Date:  1980-06-11       Impact factor: 16.971

9.  Long range RNA-RNA interactions in the 30 S ribosomal subunit of E. coli.

Authors:  P Spitnik-Elson; D Elson; S Avital; R Abramowitz
Journal:  Nucleic Acids Res       Date:  1985-07-11       Impact factor: 16.971

10.  S16 throws a conformational switch during assembly of 30S 5' domain.

Authors:  Priya Ramaswamy; Sarah A Woodson
Journal:  Nat Struct Mol Biol       Date:  2009-04-03       Impact factor: 15.369
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