Literature DB >> 6096822

The chromatin structure of the human epsilon globin gene: nuclease hypersensitive sites correlate with multiple initiation sites of transcription.

J Zhu, M Allan, J Paul.   

Abstract

We have mapped sites in chromatin flanking the epsilon-globin gene in the K562 cell which are hypersensitive to digestion with DNAseI, micrococcal nuclease and S1 nuclease. Many of those in the 5' flanking region correspond to minor upstream transcriptional starts. However, one prominent site occurs upstream of the boundary of transcription; it maps to a region with an unusual DNA sequence. In baby hamster kidney cells stably transformed with recombinant DNA containing the human epsilon-globin gene and in Cos 7 cells transiently transfected with DNA containing the epsilon-globin gene, hypersensitive sites can be demonstrated.

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Year:  1984        PMID: 6096822      PMCID: PMC320448          DOI: 10.1093/nar/12.23.9191

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  43 in total

1.  Transformation of mammalian cells with genes from procaryotes and eucaryotes.

Authors:  M Wigler; R Sweet; G K Sim; B Wold; A Pellicer; E Lacy; T Maniatis; S Silverstein; R Axel
Journal:  Cell       Date:  1979-04       Impact factor: 41.582

2.  Active conformation of the globin genes in uninduced and induced mouse erythroleukemia cells.

Authors:  D M Miller; P Turner; A W Nienhuis; D E Axelrod; T V Gopalakrishnan
Journal:  Cell       Date:  1978-07       Impact factor: 41.582

3.  Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl-paper and rapid hybridization by using dextran sulfate.

Authors:  G M Wahl; M Stern; G R Stark
Journal:  Proc Natl Acad Sci U S A       Date:  1979-08       Impact factor: 11.205

4.  Hb switching in chickens.

Authors:  J Stalder; M Groudine; J B Dodgson; J D Engel; H Weintraub
Journal:  Cell       Date:  1980-04       Impact factor: 41.582

Review 5.  DNAase I-hypersensitive sites of chromatin.

Authors:  S C Elgin
Journal:  Cell       Date:  1981-12       Impact factor: 41.582

6.  The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.

Authors:  C Wu
Journal:  Nature       Date:  1980-08-28       Impact factor: 49.962

7.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

8.  Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA.

Authors:  S Saragosti; G Moyne; M Yaniv
Journal:  Cell       Date:  1980-05       Impact factor: 41.582

9.  DNA methylation: correlation with DNase I sensitivity of chicken ovalbumin and conalbumin chromatin.

Authors:  M T Kuo; J L Mandel; P Chambon
Journal:  Nucleic Acids Res       Date:  1979-12-20       Impact factor: 16.971

10.  Nucleotide sequence of the rightward operator of phage lambda.

Authors:  T Maniatis; A Jeffrey; D G Kleid
Journal:  Proc Natl Acad Sci U S A       Date:  1975-03       Impact factor: 11.205

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  14 in total

1.  The association of the human epsilon-globin gene with the nuclear matrix: a reconsideration.

Authors:  A J Bartjeliotou; G J Dimitriadis
Journal:  Mol Cell Biochem       Date:  1992-09-22       Impact factor: 3.396

2.  Interaction of epsilon-globin cis-acting control elements with erythroid-specific regulatory macromolecules.

Authors:  J Wu; G J Grindlay; C Johnson; M Allan
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

3.  Negative regulation of the human epsilon-globin gene by transcriptional interference: role of an Alu repetitive element.

Authors:  J Wu; G J Grindlay; P Bushel; L Mendelsohn; M Allan
Journal:  Mol Cell Biol       Date:  1990-03       Impact factor: 4.272

4.  Correlation between patterns of DNase I-hypersensitive sites and upstream promoter activity of the human epsilon-globin gene at different stages of erythroid development.

Authors:  P Bushel; K Rego; L Mendelsohn; M Allan
Journal:  Mol Cell Biol       Date:  1990-03       Impact factor: 4.272

5.  RNA processing of beta-globin transcripts containing 5' flanking and structural gene sequences.

Authors:  I Winicov
Journal:  Nucleic Acids Res       Date:  1988-01-25       Impact factor: 16.971

6.  Tissue specific transcription of the human epsilon-globin gene following transfection into the embryonic erythroid cell line K562.

Authors:  M Allan; P Montague; G J Grindlay; G Sibbet; M Donovan-Peluso; A Bank; J Paul
Journal:  Nucleic Acids Res       Date:  1985-09-11       Impact factor: 16.971

7.  Binding of protein uH2A and histone H2A to DNA.

Authors:  B Kirdar; N Dalay; E Bermek
Journal:  Cell Biophys       Date:  1989-02

8.  Identification of a transcriptional silencer in the 5'-flanking region of the human epsilon-globin gene.

Authors:  S X Cao; P D Gutman; H P Dave; A N Schechter
Journal:  Proc Natl Acad Sci U S A       Date:  1989-07       Impact factor: 11.205

9.  A developmentally stable chromatin structure in the human beta-globin gene cluster.

Authors:  W C Forrester; C Thompson; J T Elder; M Groudine
Journal:  Proc Natl Acad Sci U S A       Date:  1986-03       Impact factor: 11.205

10.  Changes in minor transcripts from the alpha 1 and beta maj globin and glutathione peroxidase genes during erythropoiesis.

Authors:  J Frampton; D Conkie; I Chambers; W McBain; M Dexter; P Harrison
Journal:  Nucleic Acids Res       Date:  1987-05-11       Impact factor: 16.971

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