Literature DB >> 6086053

Thermodynamic studies of RNA stability.

S M Freier1, M Petersheim, D R Hickey, D H Turner.   

Abstract

Enthalpies and entropies of helix stabilization due to addition of 3' terminal unpaired nucleotides to a CCGG or GGCC core double helix are derived from UV melting studies. The results suggest stacking provides a significant fraction of the free energy of a terminal base pair. The effects of temperature, aggregation, and ionic strength on the determination of thermodynamic parameters are considered. Helix propagation parameters are revised and extended based on recent additions to the data set.

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Year:  1984        PMID： 6086053     DOI： 10.1080/07391102.1984.10507514

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN： 0739-1102


  13 in total

1.  Comparative calorimetric studies on the dynamic conformation of plant 5S rRNA: II. Structural interpretation of the thermal unfolding patterns for lupin seeds and wheat germ.

Authors:  T Kuliński; M D Bratek-Wiewiórowska; M Wiewiórowski; A Zielenkiewicz; M Zółkiewski; W Zielenkiewicz
Journal:  Nucleic Acids Res       Date:  1991-05-11       Impact factor: 16.971

2.  Single-molecule kinetics reveal cation-promoted DNA duplex formation through ordering of single-stranded helices.

Authors:  Nicholas F Dupuis; Erik D Holmstrom; David J Nesbitt
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

3.  Predicting DNA duplex stability from the base sequence.

Authors:  K J Breslauer; R Frank; H Blöcker; L A Marky
Journal:  Proc Natl Acad Sci U S A       Date:  1986-06       Impact factor: 11.205

4.  Characterization of RNA hairpin loop stability.

Authors:  D R Groebe; O C Uhlenbeck
Journal:  Nucleic Acids Res       Date:  1988-12-23       Impact factor: 16.971

5.  Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G + dCT3YT3G (X, Y = A,C,G,T).

Authors:  F Aboul-ela; D Koh; I Tinoco; F H Martin
Journal:  Nucleic Acids Res       Date:  1985-07-11       Impact factor: 16.971

6.  Base pairing involving deoxyinosine: implications for probe design.

Authors:  F H Martin; M M Castro; F Aboul-ela; I Tinoco
Journal:  Nucleic Acids Res       Date:  1985-12-20       Impact factor: 16.971

7.  Purine-purine mismatches in RNA helices: evidence for protonated G.A pairs and next-nearest neighbor effects.

Authors:  S E Morse; D E Draper
Journal:  Nucleic Acids Res       Date:  1995-01-25       Impact factor: 16.971

8.  Contribution of 3'T and 3'TT overhangs to the thermodynamic stability of model siRNA duplexes.

Authors:  Jolanta Lisowiec-Wachnicka; Brent M Znosko; Anna Pasternak
Journal:  Biophys Chem       Date:  2019-01-07       Impact factor: 2.352

9.  Improved free-energy parameters for predictions of RNA duplex stability.

Authors:  S M Freier; R Kierzek; J A Jaeger; N Sugimoto; M H Caruthers; T Neilson; D H Turner
Journal:  Proc Natl Acad Sci U S A       Date:  1986-12       Impact factor: 11.205

10.  Anomalous hairpin formation in an oligodeoxyribonucleotide.

Authors:  J G Nadeau; P T Gilham
Journal:  Nucleic Acids Res       Date:  1985-11-25       Impact factor: 16.971
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